KEGG   Rissa tridactyla (black-legged kittiwake): 128911687
Entry
128911687         CDS       T09443                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
rtd  Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03030  DNA replication
rtd03410  Base excision repair
rtd03420  Nucleotide excision repair
rtd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rtd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    128911687 (RFC4)
   03410 Base excision repair
    128911687 (RFC4)
   03420 Nucleotide excision repair
    128911687 (RFC4)
   03430 Mismatch repair
    128911687 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rtd03032]
    128911687 (RFC4)
   03036 Chromosome and associated proteins [BR:rtd03036]
    128911687 (RFC4)
   03400 DNA repair and recombination proteins [BR:rtd03400]
    128911687 (RFC4)
DNA replication proteins [BR:rtd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    128911687 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    128911687 (RFC4)
Chromosome and associated proteins [BR:rtd03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    128911687 (RFC4)
DNA repair and recombination proteins [BR:rtd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     128911687 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    128911687 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_30 AAA_16 AAA_22 AAA_11 DUF815 AAA_24 Mg_chelatase AAA_14 SLFN-g3_helicase RuvB_N AAA_19 AAA_28 AAA_5 TIP49_C DNAX_ATPase_lid AAA_7 ResIII AAA_3
Other DBs
NCBI-GeneID: 128911687
NCBI-ProteinID: XP_054062947
LinkDB
Position
6:complement(1278579..1291938)
AA seq 362 aa
MQAFLKGPSAISTKPPAAKEKGAAGSSGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKICPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKEHVKISSEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIVTEIAGVIPKETIDELLSVCRSGSFEKLETLAKNLINEGYA
VAQLVNQLHDTVVESEDYSDKQKSVIVEKLAEVDKCLADGADEFLQLVSLCALVMQQLTQ
NN
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaaaggcccgtctgctatcagcaccaagccccccgctgccaaggag
aagggcgcagcggggagcagcggggagggcaagaggctcaagcccatcccctgggtggag
aaatatcgtcccaaaaacgtggatgaagtcgccttccaggatgaagttgttgctgtgctg
aaaaagtccttggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagcggctagagagctctatgggcctgaattattccgg
caaagagtccttgagttaaatgcttctgatgagcgtggaatacaagtgattcgggaaaaa
gtgaaagcttttgctcagctaactgcgtctggaagccgctcagatggtaaaatttgtcct
ccttttaaaattgtaatcctggatgaagcagactcaatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatcgaaaacaacacgtttctgccttatttgtaactac
atcagcagaataattgagcctttaacatctcgatgctccaaattccgcttcaagcctttg
tcagacaaaatccaacagcagaggctattggacgtttctgagaaggaacatgtgaaaatc
agtagtgaggcagtatcttaccttgttaaagtgtcagagggggacttaagaaaagcaatt
acctttcttcaaagtgccactcgcctaatgggtgggaaagagatcacagagaagatagtc
actgaaattgctggggtcatccctaaagaaacaattgatgaactgctgtctgtctgccgg
agtggttcctttgagaaactggaaacgctggcaaagaatctcatcaatgaagggtatgct
gttgctcagctcgtaaaccagctgcacgataccgttgtggagagcgaagattacagtgac
aagcagaaatctgtcatagttgagaaacttgcggaagtagacaagtgcttggctgacggt
gctgatgagttcctgcagctggtgagtctctgtgccctggtcatgcagcagctgacgcag
aacaactga

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