Rissa tridactyla (black-legged kittiwake): 128912292
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Entry
128912292 CDS
T09443
Symbol
TRPV1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
128912292 (TRPV1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtd04040
]
128912292 (TRPV1)
Ion channels [BR:
rtd04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128912292 (TRPV1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_3
Ank_5
Ank_4
Motif
Other DBs
NCBI-GeneID:
128912292
NCBI-ProteinID:
XP_054063836
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Position
7:complement(51867175..51880212)
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AA seq
843 aa
AA seq
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MSSILGKMKKFGSSDMEESEVTDEHTDGEDSTLETPDSLQGTPSNKVQPPKSNIFARRGR
FVMGDSDKDMAPMDSFYQMDHLMAPSVIKFHANLERGKLHKLLSTDSITGCSEKAFKFYD
RRRIFDAVAQGNTRDLDDLLLYLNRTLKHLTDDEFKEPETGKTCLLKAMLNLHDGKNDTI
PLLLDIARKTGTLKEFVNAEYTDNYYKGQTALHIAIERRNMYLVKLLVQNGADVHARACG
EFFRKIKGKPGFYFGELPLSLAACTNQLCIVKFLLENPYQPANITAEDSMGNTVLHTLVE
IADNTKDNTKFVTKMYNNILILGAKINPILKLEELTNKKGLTPLTLAAKTGKIGIFAYIL
RREIKDPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEIIAYSSETPNRHEMLL
VEPLNRLLQDKWDRFVKHLFYFNFFVYTMHIIILTAAAYYRPVEKEEKPPFTFGHSTGEY
FRVTGEILSVLGGLYFFFRGIQYFVQRRPSFKTLIVDSYSEVLFFVHSLLLLSSVVLYFC
GQELYVASMVFSLALGWANMLYYTRGFQQMGIYSVMIAKMILRDLCRFMFVYLVFLLGFS
TAVVTLIEDDNEGQDTNSSEYSRCCHMKRGRTSYNSLYYTCLELFKFTIGMGDLEFTENY
RFKSVFVILLVLYVILTYILLLNMLIALMGETVSKIAQESKSIWKLQRAITTLDIENSYL
NCVRRSFRSGKRVLVGVTPDGQDDYRWCFRVDEVNWSTWNTNLGIINEDPGYSGDLKRNP
SYSIKPGRVSGKNWKTLVPLLRDGSRREETHKLPEEVKLKPILEPYYEPEDSETLKESLP
KSV
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctattcttgggaagatgaagaaatttggtagttctgacatggaggaatctgaa
gtgacagatgaacacacggatggggaggattccacgctggaaacgcctgacagcctccag
ggtacacccagcaacaaggtgcagccacccaaaagcaacatctttgcaagacgtgggcgg
tttgtgatgggggatagtgacaaggacatggctcccatggactccttttaccagatggat
cacctgatggcaccttctgtcatcaaatttcatgccaatttggagagggggaaacttcac
aagctcctatctacagattccatcacaggctgttcagaaaaagctttcaaattttatgac
cgcagaaggatctttgatgctgtagcccaaggcaacacaagggacctggatgatctgcta
ctctatcttaacagaaccttgaagcatctcacagatgatgagttcaaagagcccgaaact
gggaaaacctgcttactgaaagccatgctgaatctacatgatgggaaaaatgataccatt
cccttgctgctggatattgcaaggaaaacgggaactctgaaagagtttgttaatgcagag
tataccgacaactactacaagggccagactgcacttcacatcgccattgaaagaaggaac
atgtacctggtgaagctcttggtccagaatggagcagatgttcatgcaagagcctgtggg
gagttcttcaggaaaatcaaagggaaacctggcttttattttggggagctgcctttgtcc
ctggctgcctgcaccaaccagctctgcattgtgaaattcctccttgagaacccctaccag
ccagccaacatcactgctgaggactccatgggcaatacggtcctgcatacactggtggag
attgcagacaatactaaggataataccaagtttgttaccaagatgtacaataacatattg
atccttggtgccaaaattaatccaatcctgaagctagaagaactcaccaacaagaaaggg
ctgactccattaactctggcagccaaaacagggaagatagggattttcgcttacatcctc
agacgagagatcaaagatcctgagtgcagacacttgtctaggaagttcactgaatgggct
tacggacctgtccactcatctctttatgatctgtcctgtatagacacatgtgagaaaaat
tcagtgcttgagattattgcctacagtagtgaaacaccaaaccgtcatgagatgctgctg
gtggaaccccttaacaggctgctgcaagacaagtgggaccggtttgtcaaacacttgttt
tacttcaacttctttgtctataccatgcatatcatcatcctcactgcagctgcttactac
agacctgtagagaaggaggaaaagcctcccttcacatttggtcacagcactggggaatat
tttcgagtgactggagagatcctgagtgtactgggaggtctctatttttttttcagaggg
atacagtatttcgtgcagaggcgcccatcattcaagacgctgatagttgacagctacagt
gaggttcttttctttgttcactccttgctcctcctgagctctgtggtgctgtacttctgt
ggccaggaactgtacgtggcttccatggtcttctccttggcgctgggctgggctaacatg
ctgtactacacccgtggcttccagcagatgggcatttactctgtcatgattgccaagatg
atccttagagatttatgtcgcttcatgtttgtctatctagtattcctcttgggattttct
acagctgtggtgactttaattgaagatgacaatgaggggcaagacacaaatagctcagaa
tattcccgatgctgccatatgaaacgaggccgcacgtcctacaatagtctgtattatacc
tgcttggagcttttcaagttcactattgggatgggggacctggagttcacagagaactac
aggttcaagtctgtgttcgtcatccttttggttctctatgtcatccttacatacatcctc
ctgctcaacatgcttattgcactgatgggggaaactgtgagcaaaattgcgcaggagagc
aagagcatctggaaactccagagagccatcacaaccttggatatcgaaaacagctacttg
aactgtgtgaggcgctccttccggtctgggaagcgagtcttggtgggggtcacacctgac
ggccaagatgattacagatggtgctttagggttgatgaagtgaactggtccacgtggaat
actaatctgggcataatcaacgaagaccctgggtactctggggacctcaaacgaaatccc
agttattctattaagcctggcagagtttcagggaaaaactggaaaacgttggttccactt
ttaagagatggaagcaggagagaagagactcataaactgccagaagaagtaaaattaaaa
cctattttggaaccttattatgagccagaagattctgagacgttgaaagagtcacttcca
aagtcagtctaa
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