Rissa tridactyla (black-legged kittiwake): 128912404
Help
Entry
128912404 CDS
T09443
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04622
RIG-I-like receptor signaling pathway
rtd05164
Influenza A
rtd05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128912404 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
128912404 (IFIH1)
05168 Herpes simplex virus 1 infection
128912404 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rtd04054
]
128912404 (IFIH1)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128912404 (IFIH1)
Pattern recognition receptors [BR:
rtd04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128912404 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
Helicase_C
CARD
SWI2_SNF2
DUF3638
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
128912404
NCBI-ProteinID:
XP_054064212
LinkDB
All DBs
Position
7:complement(19612475..19642912)
Genome browser
AA seq
1007 aa
AA seq
DB search
MAEECRDERFLYMISCFRPRLKQFIRVQPVLDRLPSLSPEDRERVRAAALQRGDMEGAEE
LLRAVERGPRGCGWFHEFLQALEQGGCRLAACYVNPSLSQLPSPTEEADHDLCVHLVQLL
HSTLVDKMQTMQVAEKCLQMGIFQDDDLDRIHTVTDNRGNRDGARELLSRIVQKKDWFSP
FLVALRETQHGDLADDLSGNTGETENRQNGMKNSTNEETEVTSQPGHAVAEDMKQQENVN
GSFSSENSVSETSIGKNSLVPESDVSIGDESVSNLNENLGQSCTTSDSEEDEVASRVSPE
PDLILRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKKRASEPGKVIVLV
NKVPLVEQHLRKEFNPFLKRWYQVIGLSGDSQLKISFPEVVRRNDVIISTAQILENSLLS
AAKEDEEGVRLSDFSLIIIDECHHTQKEGVYNNIMRRYLKEKRKNRKLAKENKPLIPQPQ
ILGLTASPGVGGATSNSKAEEHILKICANLDARRIMTVKEHASQLKNQVKEPYKKTVIAD
DKRRDPFRERITEIMSEIQNYCQLYPKSEFGTQPYEQWVIREEKKAAKEEKRKERVCAEH
LKKYNDALQINDTIRMVDAYNHLNNFYKEEKSKKTVTSDDDDDEPAVSKQDETDEFLIGL
FHAKKKQLKELARKPEYENEKLIQLRNTLMEEFTKTEEPRGIIFTKTRLSAFALFQWIKD
NPKFEEVGIKAHYLIGAGHNSEMKPMTQNEQREVIDKFRGGSVNLLIATTVAEEGLDIKE
CNIVIRYGLVTNEIAMLQARGRARADESTYALVASSVSGAVEREDVNIFREKMMYKAIER
VQNMPQEEYLDKIQNLQLQSIVEKQMKAKRDQQKTYKKTPSLVTFLCKNCHKPVCSGEDI
QVIENMHHVSVKKDFQTLYHTKENKTLQDKHADYQTNGEIICKDCGQAWGNMMVHRGLDL
PCLKIRNFVVVFEDKKTTKHIFKKWGELPIRFPSLDYAAHCPSSDED
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggagtgccgagacgagcggttcctctacatgatctcctgcttcaggccgcgg
ctgaagcagttcatccgggtgcagccggtgctggaccggcttccctcgctgagcccggag
gacagggagagggtgcgggcggccgccctgcagcgcggcgacatggaaggggcggaggag
ctgctgcgggccgtggagcggggtccccgcggctgcggctggttccacgagttcctgcag
gcgctggagcagggcggctgcaggctggctgcctgctatgtgaaccccagcctcagccag
ctgccctcaccgaccgaggaggctgaccatgacctctgcgtgcacttggtgcagctgctc
cacagcacactggtggataaaatgcagaccatgcaggtggctgagaagtgcctgcagatg
ggcatcttccaggatgatgacctagatcggatccacactgttactgacaatcgtgggaat
agagatggtgcgagggagctattgagcagaatagtgcagaagaaagactggttctctcct
tttttggttgctttgcgtgaaacccaacatggagaccttgcagatgacttaagcggaaat
acaggagaaacagagaatagacaaaatgggatgaagaacagtacaaacgaagaaacagaa
gttacaagccaaccaggacatgctgtagcagaggatatgaaacagcaagagaatgtgaat
ggtagtttcagcagcgagaacagtgtatcagaaacatctattggaaagaattctctagtt
ccagagtcagatgtctccataggagatgaaagtgtcagtaacttgaatgaaaacctggga
cagagctgcacaaccagtgattcagaggaagatgaagtggcgagcagagtttcacctgag
ccagatctgatcctgagagattaccagatggaagttgcaaagccagcactgaatggggag
aatatcataatatgtctgcctacaggcagtggtaaaaccagagtggctgtttacattacc
aaagatcacttggataagaagaaaagagcatctgagcctggaaaagttatagtacttgtt
aataaggtaccgttggtagaacagcatttacgaaaggagtttaatccattcctgaagcgt
tggtatcaggttattggtttaagtggtgattctcagctgaaaatctcatttcctgaagtt
gtcagaagaaatgatgtcatcatcagtacagcacagatccttgagaattcactgttaagt
gcagccaaagaagatgaagaaggtgtccgcttatcagatttttcactcatcattatcgat
gagtgtcatcacacgcaaaaggaaggtgtctacaacaatataatgcgacgttacttaaaa
gaaaagaggaagaacaggaagctggcaaaagaaaacaaaccactgatcccacagcctcag
attctgggacttacagcctcacctggtgtaggaggtgcaacatccaactcaaaagctgaa
gaacatattctgaaaatctgtgccaatcttgatgcacgtagaatcatgactgttaaagag
catgcctcccaactgaagaaccaggtgaaggaaccgtataagaagactgtgattgcagat
gacaaaagaagggatccatttagagagagaattactgaaatcatgagtgagattcaaaac
tattgccagctctatccaaaatctgagtttggaactcagccatatgaacagtgggtgatt
agagaagagaaaaaagctgcaaaagaagaaaaacgcaaggaacgtgtctgtgcagaacac
ctgaagaaatacaatgatgctctccagataaatgataccatccgaatggtggatgcgtat
aatcacctaaataacttttataaggaggagaaaagtaagaagacagtaacgagtgatgat
gatgatgatgaaccagcagtatcaaaacaggatgaaacagatgaatttctaataggttta
tttcatgcaaaaaagaaacagctgaaagagttggctagaaagccagaatatgaaaatgag
aagctaatacagttgcgaaacactttaatggaggagttcacgaagacggaagaacctaga
ggaattattttcaccaagactcggctaagcgcctttgctctattccagtggattaaggac
aacccaaaatttgaagaagtgggaattaaggcccattaccttattggtgctggacataac
agtgaaatgaaacccatgactcagaatgagcaaagggaagtcattgataaattccgaggt
ggaagtgtaaatttacttattgccactactgtagctgaggaaggcctagacatcaaagag
tgtaacatcgttattcgctatggcctcgtcaccaatgaaattgctatgctgcaggctcgc
ggtcgagctcgagctgatgagagcacctatgcacttgtggcttcaagtgtctcaggagct
gttgaacgtgaagatgttaatattttccgtgagaaaatgatgtataaggccatcgagcgt
gtccagaacatgccacaggaagagtatttagataagattcagaatttgcagttgcaaagt
atcgtggaaaaacaaatgaaggcaaagagagatcagcagaagacatacaagaaaacccct
tcattagtaactttcctatgcaaaaattgccacaagccggtatgttctggagaagacata
caagttattgaaaacatgcatcatgtcagtgtgaaaaaagacttccaaactctttaccat
acaaaagaaaataagacactgcaagataagcatgccgattaccagacaaatggggaaatt
atatgtaaagactgtggacaagcttggggaaatatgatggttcaccgaggccttgacctg
ccttgtctaaagataagaaattttgtggttgtgtttgaagacaagaaaacaacaaagcac
atttttaagaaatggggagaactgcccatcaggttccctagtcttgattatgcagctcat
tgtccttcaagtgatgaagattaa
DBGET
integrated database retrieval system
