Rissa tridactyla (black-legged kittiwake): 128912465
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Entry
128912465 CDS
T09443
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128912465 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtd03400
]
128912465 (LIG3)
Enzymes [BR:
rtd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128912465 (LIG3)
DNA repair and recombination proteins [BR:
rtd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
128912465 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
aRib
Motif
Other DBs
NCBI-GeneID:
128912465
NCBI-ProteinID:
XP_054064372
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All DBs
Position
7:54633045..54648752
Genome browser
AA seq
995 aa
AA seq
DB search
MPTGSRTLSQAARALSRGTGLFSPHTQVSLPRPYLCCLGLPGASPNYWYQLLLRRVSLQS
TGGNQGGGAGIFHFSVLLNAWLRQACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGM
VRIGKIVPNPFTESGGDMKEWYHVKCMFEKLDKARATTKKIEDITDLEGWEELQDAEKDL
INKHISEANSKAASTPKKKVIVQAKLTATGQLTTKDPLALITPSPKKFSGFTAKPKNSED
VSANSDHKSSLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDG
FHGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCNQEEMIRDLEQGDVSETIRLFF
EQSKSCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQHITRRCTGNDLKCIIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNQQEAEKMPGLKRTLSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFNYFSRSLKPVLPHKV
AHFKDFIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDISLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLV
LKDIKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
KSEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKK
APVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQLSKEKADF
SVAAGEEDESTAGSSGENEGNSRSSTPHSAIKSPPSKSPAKAQKPEESKAVVGSPQKSEE
KRGEKRKASEMEDNGKKTLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVPEFDTASA
THVIGEDIDENPGAKRVSPNWIWECIRKRRLVAPC
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgcccacaggcagcaggacactgtcacaagctgcccgagcactcagcaggggcacagga
ctattctccccccatacacaggtctccttgccaagaccctacctttgctgccttggcctc
cctggggccagccccaattactggtaccagctgctgttacggcgtgtatctctccagtcc
acaggcggaaaccaaggtggtggtgctgggattttccacttctccgtgcttttgaacgct
tggcttcgccaagcttgcacagctgcagaggacatggcagaacagagatactgcgtagac
tatgccaagcgtggcacagcaggctgcaagaagtgcaaggagaagatcgtgaaaggaatg
gtgcgcattggaaagattgttcccaatcctttcacggagtctggtggggacatgaaggag
tggtaccatgtgaagtgcatgtttgagaagttagataaggccagggccaccaccaagaaa
atcgaagacatcacagacttggaaggatgggaagagctacaagatgcggagaaagactta
atcaacaagcacatctcagaagctaattccaaggctgcaagtacaccgaagaaaaaagtg
atagtccaagctaaactcactgccacaggacaactaactacaaaagatccgttagctctc
atcactccatcaccaaagaagttctctggcttcacagcaaagccaaagaattcagaagat
gtctctgcaaactctgaccacaagtctagcctatctgcaaaaaaatgtgatccgaaacat
aaagactgcttgctgcgagagttcaggaagctttgtgccatggttgctgaaaagcccagc
tataacgtgaaaacgcaaatcatccaggattttctgaagaagggatctggaggagatggt
tttcatggtgatgtatacctgaccattaagctgctcttaccaggcgtcattaaaattgtt
tacaacttgaacgataagcagatcgtaaagctgtttagtaggatttttaactgcaaccaa
gaagaaatgatccgggacctggagcagggagatgtttccgagaccatacgcctcttcttt
gaacagagcaagtcttgtcctccagcagccaaaagtctcctgaccatccaagaggtagat
gaattcctaatccagctatcaaagctgactaaggaagatgaccagcaaagtgtgctgcaa
catatcactcgcaggtgtacgggcaatgacctgaaatgcatcatcaggctaattaagcat
gacttgaaaatgaacgctggagcaaagcatgtgctggatgctttggatcccaatgcttac
gaggcgttcaaagcatcacgcaacctccaggatgtggtagagcgagtcctgaagaaccag
caggaggccgagaagatgccaggtctgaagcgaaccctcagtgtgcaggcctccctgatg
acccccgttcagcccatgctggctgaagcctgcaagtccattgagtatgccatgaagaag
tgcccaaatggcatgtatgcagagatcaaatatgatggcgagcgggtgcaggtccataaa
aatggagatcattttaactacttcagcagaagcctcaaacctgttcttccacataaagta
gcccattttaaggacttcatcccccaggctttccctggtgggcaaagtatgatcctggat
tcagaagttcttctgattgacaacaaaactggcaagccacttccttttgggactcttggt
gtgcacaagaaagctgctttccaagacgccaacgtttgcttgtttgtgtttgactgcatc
tatttcaatgacatcagcctgatggacaggcctctgtgtgaacgtcgtaagtttctccat
gataacatggttgaaatccccaaccgcatcctcttctcggagatgaagcacgtcacaaaa
gcttcagatctggcagatatgatcacccgagtcatccgtgagggactggaaggactggtg
ttgaaagacataaagggtaattatgaaccaggaaaacgacactggctgaaagtgaaaaag
gactacttaaacgagggtgcaatggctgacacagcagacctggtggtgctgggagctttc
tatggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggttgctatgatccc
aagagtgagaagtggtgcactgtgaccaagtgttctggtggccatgatgatgccaccttg
gcacgtctgcaaacagagctggatatggtgaagatcagcaaggatcctagtaaaattcca
aggtggctgaaaattaacaaaatctactacccagacttcattgtcccggatccaaagaaa
gccccagtgtgggagatcacaggggctgaattctctaaagccgaagcccacactgcagat
gggatctccatccgcttccctcgctgcacccgcattcgagatgacaaagactggaagaca
gccaccaacctccagcagcttaaggagttgtaccagctctccaaagagaaggctgatttc
agcgtcgctgctggggaggaagatgagtccacggctggcagcagtggagagaacgaggga
aactccaggtcttccacaccacacagcgctattaaatctcccccaagcaagtcacctgca
aaagcccagaagccagaagagagcaaagcagtcgttggatcccctcaaaaatcagaggag
aaacgaggggagaagagaaaagcatctgagatggaggacaatggaaaaaagacgctgctg
gacatattcactggtgtgaagctgtacctgtcgccctctgtgaaggactttgacaaaatc
cggcggtactttatagcatatgatggggatcttgtgccagagtttgacacagcctcagca
acgcatgttataggggaggacattgatgagaatcctggtgctaagcgcgtttctcccaac
tggatctgggaatgcatccggaaacggagactggtggccccatgctag
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