Rissa tridactyla (black-legged kittiwake): 128912590
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Entry
128912590 CDS
T09443
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128912590 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtd03041
]
128912590 (PRPF40A)
Spliceosome [BR:
rtd03041
]
Complex A
U1 snRNP components
U1 related factors
128912590 (PRPF40A)
Complex B
128912590 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
128912590
NCBI-ProteinID:
XP_054064772
LinkDB
All DBs
Position
7:1791590..1818569
Genome browser
AA seq
1026 aa
AA seq
DB search
MSGGDSAAAAATASPQPLPFSLPKPPPLMQLTPGDAVRPVASAADQSPKGTRLAGRPDWP
AGKPVSLLAPLLPPRAEPEPLMPFGPSSRQPLRGRLLGRCSGGSLLSPSMRPGGVDRGSL
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTATTNSSVN
EEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGK
PYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEDSTPTTSAPAAAAEAASAATTATT
AGETAGAVTTTTAASAAAAPEAESAAAASGENESTGTAAAEEQGQATSASAAQEQSGETA
ANAADDSSKQEASADAASKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWE
QAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEK
MTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKN
ILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEK
QKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPVFS
SGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTL
DAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRD
RFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGS
ESEDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIER
EKDKKERERESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLE
QLDEDQ
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggggactcggcagcggcggcggcgaccgcctccccgcagccgctcccgttc
tccttgccgaagccccctcccctcatgcagctgacgccgggggacgctgtccgccctgtc
gcctccgccgccgaccaatcgccgaagggcacccggctggcgggccgcccggattggccg
gccgggaagccagtcagcctgctggccccgctgctcccgccccgcgcggaacccgagccg
ctcatgccctttggcccctcgtcgcggcagccactcagagggcggcttcttggcaggtgc
agcgggggcagcctcctgagcccctcgatgcggcccggcggcgtcgaccgcggctccctc
atgatgggacacccaggcatgccacattatcctcccatgggaatgcaccctatgggtcag
agaccaccaaacatgccaccagttccacatggtatgatgcctcagatgatgccccccatg
ggaggaccgccaatggggcagatgcctggaatgatgcagtcagtaatgcctggaatgatg
atgtctcacatgtctcaagctgctatgcagcctacagttccgccaggggtgaacagtatg
gatgcgcaagtaggcgtaacgcctcctggaactcagagctctgttttgtttcgccctcag
acaacgcatcccgtagtttgtgcagcccagcaaactgccaccaccaacagttctgttaac
gaagagcactccaaacagaaatctacatggacagaacacaaatcacccgatggaagaacg
tactactataatactgaaacaaagcagtctacatgggagaagccagatgatctcaaaaca
ccggctgagcaattgttgtctaagtgcccctggaaagagtataaatctgactctggaaag
ccctactattacaattcccaaacaaaggaatcacgctgggcaaaacccaaagagcttgag
gatcttgaagcaatgattaaagctgaagaaaacagcacaaagcccgaagactcaactcca
acaacatctgctccagccgcagcagcagaagcagcaagtgcagccaccacagccacaact
gctggagagactgccggcgctgtcactaccaccactgcggcttcagcagcagcagcgccc
gaagcagaatctgctgcagctgcttctggggaaaacgagagtactggcacggctgcagct
gaggaacagggacaagcgacttctgcatctgctgcgcaggaacagagtggagaaactgca
gctaacgcagcagacgactcttccaagcaggaggcttcggcagatgctgcgtcaaagaaa
gaggatgatgatgcccaaccagttaaaaaaacctatacgtggaatacaaaggaagaagca
aagcaagcatttaaagaactgttaaaagaaaagcgagtaccgtccaatgcttcttgggaa
caagctatgaaaatgatcattaatgatcctagatacagtgctttggcgaaattaagtgaa
aaaaagcaagcttttaatgcttacaaagttcaaacagaaaaagaagagaaagaagaagca
agatcaaaatacaaagaagctaaagaatcattccagcgttttcttgaaaaccatgaaaag
atgacatccacaacaagatacaaaaaagctgaacaaatgtttggggagatggaagtctgg
aatgccatatctgagcgtgatcgtctcgaaatttatgaagatgtcttgttttttctgtct
aagaaagagaaggaacaagccaaacagttacggaagaggaattgggaagctttgaagaac
atactagataacatggctaatgtcacttactgtactacgtggtcggaggctcagcagtat
ctgatggacaatcctacatttgcagaagacgaggaacttcagaacatggataaggaggat
gcactgatctgtttcgaggaacatattagggcactggaaaaagaggaggaagaagaaaaa
cagaaaagtttgctgagagaaagaaggcggcagcgtaaaaatagagaatcttttcagctc
ttcttagatgaactgcacgagcatggacagttgcattcaatgtcctcctggatggagttg
tacccaaccataagctctgacatcagattcactaacatgcttggtcagcctgttttttca
tcaggatcaacagcacttgatcttttcaagttctatgttgaagacttgaaagcacgttac
cacgatgaaaagaagataataaaagatatcctaaaggataaaggatttgtggttgaagtg
aatacttcttttgaagattttgttacggtcatcagttcaactaaaagagctactacttta
gatgcgggaaatatcaagctggctttcaacagtctgctagaaaaggcagaagcccgtgaa
agagaacgggaaaaagaagaagctcgcaaaatgaagcggaaagagtctgccttcaagagt
atgttgaagcaagctactcctccaattgaattggacgctgtctgggaagatatcagagat
agatttgtgaaggaaccagcatttgaagacatcactctggagtccgaaagaaaaagaata
tttaaagatttcatgcatgtactagagcacgagtgtcagcatcatcattcaaagaacaag
aaacattctaaaaagtctaaaaaacatcacaggaagcgatcacgttctcgttcgggctca
gagtcggaggatgatgacagccattcaaagaagaaaaggcagcgttcagaatctcgatca
gtttctgagcgttcttccagtgcagaatccgagagaagttacaagaagtcaaaaaaacac
aagaaaaagagcaagaagagaagacataagtctgattcaccagaatcggatattgaacga
gaaaaagacaaaaaagaaagagagcgagagagcgaaaaggatagagctagacaaagatct
gaatcgaaacataaatctcctactaaaaaacgacctggaaaagattctgggaactgggac
acttctgggagcgagctgagcgaaggggagttggaaaaacagaggaggactcttttggaa
caactggatgaagatcaatga
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