Rissa tridactyla (black-legged kittiwake): 128912713
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Entry
128912713 CDS
T09443
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128912713 (COL18A1)
00535 Proteoglycans [BR:
rtd00535
]
128912713 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128912713 (COL18A1)
Exosome [BR:
rtd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128912713 (COL18A1)
Proteoglycans [BR:
rtd00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128912713 (COL18A1)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128912713 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
128912713
NCBI-ProteinID:
XP_054065091
LinkDB
All DBs
Position
7:22367883..22409605
Genome browser
AA seq
1739 aa
AA seq
DB search
MAPAPPRLEFLLLLACCFSSSDTQLLDWIWGSTNTTGSPAAPGVGTAPPEPLATAPTPST
SPGTWGVQVVGDITTPQRQEMDPSTAAPAGEGTVSENTKQWDRNATGLVESTARPSIAPP
HSTSPAHGQGAARSSTKDLQLLGTGTTKDPQVLGMGNTEDRQLLGTGTPAATGTQVSLQR
PAGLRPGSAPFPFSPGDTNRKQAVPPRDPTVQLPRHHHGASPASPLGTGHWGLVLAGMNG
SRSPPLPNGRAANSVDPPLVNTSGPLEFDLLTAATRLYSSSSTELVSLPGLLPPAGRCLP
VPTHLPFCTILGTNHFRLPNYLRHGSEAEIRAALHEWEGLLESQCHRYVKWFVCLLLLPG
CSALVPVTPPPCQGFCEAVRDLCWMHLAGGRLPLPCDALPEEDKGYSCVFINASAENLST
EVSLLELIGDPPPEEILKIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQP
TTPRAGVLFAVTDSSQSIIYVGIKLSELRAGKQQIIFYYTEPGSPSSYAAATFTVPTLLN
QWTRFAISVEEDEVVLYLDCEEHERVRFERSPDEMELEDGSGLFVAQAGGADPDKYQGVI
ADLKLQGDPRAAERQCEEEEDDTEEVSGDFGSGAEGGHQPSGKDRGVPGLVDAVPVTSPP
VAAGGGPRRGGASPQQAERTRAEDTLQVSTGGTGPKGEKGEKGERGLKGDSGTGSIVGTG
SVKGEKGEKGELGIKGSAGFGYPGSKGQKGEPGDPGPPGTLSRHSDGLVVEQVTGPPGPP
GKDGAPGRDGEPGDPGEDGKPGDMGPQGFPGMPGEPGLKGEKGEPGIGPRGPPGPPGPPG
PPGPSSKHDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNRTDL
QGPPGLPGRDGTPGSPGPQGPPGRDGAAGQPGPKGEQGDVGDLGLPGAPGPKGSKGETGP
AGAPGEMGLAGLPGPIGPRGQPGPPGPPGPPGLGYEAGFGDMEGSGLPFAASSPGPPGPE
GPQGVPGLPGVKGEVGSPGQPGLPGPKGDTGVPGVDGRPGLEGFPGPQGPKGDRGSPGEK
GERGQDGVGLPGPPGPPGPPGQVIAVSGKDKSSVALPGPEGRQGHAGFPGPVGPKGDRGS
SGPQGSPGLKGEKGEPGVIISPDGTVVTAQVKGEKGEPGLRGPMGPSGPQGRAGMKGEIG
FPGRPGRPGMNGLKGEKGDPMDVSSVLGLQGPPGPPGPPGPPGPPGSIAYDSSNAFSDSG
HPVLPAFPGFHQFPGQKGEKGDAGAPGPPGHFSYDLSHFGANLQGDKGEPGPKGEKGEPG
NTPLYGPSVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPG
PPGQPSFPGPHRQAISIPGPPGPPGPPGPPGTSGMSFGLRTLPTYQAMLSAAHELPEGGL
IFLTDRQELYVRLRGGFRRVLLEEHTLIPSSALDNEVYDKPPSIHYAGPQPPLQPRGPLH
PLHNHSPLPTARPWRGDEVVANQHRLPEQPLLHHQHELLNSYYIHRRPDPAPVATHVHQD
FQPALHLVALNAPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIVRRAD
RAAVPIVNLRDEVLFSNWEALFTGSGAPLQASTRILSFDGRDILQDAGWPQKSIWHGSDA
KGRRLPESYCETWRTEERSATGQASSLASGKLLEQVASSCQHAFIVLCIENSFMTAAKK
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atggccccggctccgcctcgcttggagtttctgctcctcctggcttgctgcttctcctcc
tccgatactcagctcctggactggatttggggcagcacaaacaccacgggaagcccagca
gcacccggtgtgggaaccgcaccgccggagcctcttgccactgctcccacccccagcacg
tccccagggacatggggtgtccaggtggtgggggacatcaccaccccacagcgccaggag
atggatcccagcacagcagcacctgccggcgaggggactgtgtctgaaaacaccaagcag
tgggacaggaatgccacggggctggtggagagcacagcacggccaagcatcgctcctccc
cacagcacgtcacctgcccatggccagggtgcggccagaagctccaccaaggacctgcag
ctcctggggacagggaccaccaaggacccacaggtcctggggatggggaacaccgaggat
cggcagctcctggggacagggacccccgcagcaacagggacacaggtgtccttgcagaga
ccagcgggtcttcggccaggtagtgccccttttcctttctcaccaggtgacactaaccgt
aagcaggcggtgccaccccgggaccccacggtgcaactgccccgacaccaccacggagca
tcgcccgcctcaccgctcggcactggccactgggggctggtgctggctggcatgaatggg
agccggagccctcctttgcctaacgggagggcagctaacagtgtggatcctcctcttgtc
aatacctccggtcctcttgagtttgatttactaaccgctgctacacgactctacagtagt
agcagcacagagcttgtatccttacctggactgctgccgccagccggccgttgcctgccc
gtcccaacccacctgcccttctgcaccattctgggcaccaaccatttcagattaccgaat
tacctccgccacggcagtgaggcggaaattcgggcagctttgcatgagtgggaggggctg
cttgaatcgcagtgccatcgctacgtgaagtggtttgtctgcttgctcctgctccctggg
tgtagcgccttggtccctgtaacccccccgccgtgccagggcttctgcgaggccgtcaga
gacctgtgttggatgcacttggctggcggacgcctgcctctgccttgtgatgctctccct
gaggaggacaaagggtattcttgtgtctttattaatgcttctgcagagaacctgagcact
gaggtcagcctcctggagctgatcggagatcccccgccagaggagatcctcaaaatttat
ggccccgacaacaacccaggctatgtcttcggccccaatgccaacacaggccaggtggcc
cggtaccacctgccgagccctttctaccgggacttttccctcctgttccacatccagcct
actacgccccgggccggtgtgctctttgctgtcacggactcctcacagagcatcatctat
gtgggcatcaagctctcagagctgcgggcaggcaagcagcagatcatcttctactacaca
gagccaggctcaccaagctcatatgcagcagccaccttcaccgtgcccaccttgctcaac
cagtggacgcgctttgccatcagcgtggaggaggacgaagttgttctctacctggactgc
gaggagcacgagcgggtccgcttcgagcgctccccagatgagatggagctggaagatggc
tccgggctctttgttgctcaggctggaggggctgacccagataaatatcagggggtgatt
gctgatttgaagctgcaaggggacccgcgggcggccgagcggcagtgcgaggaagaggaa
gatgacactgaggaggtctctggtgattttggcagcggggcagaaggtggacaccaaccc
tcggggaaagacaggggtgtcccggggctggtggatgctgtcccagtcacctctccccct
gtggcagcgggtggcgggccgaggagaggtggagcctccccacagcaagctgagaggacc
agagcagaggacacactgcaagtctccacgggaggcactggccccaaaggtgaaaagggg
gagaagggcgagcgtggactgaaaggggactcagggactggcagcatcgtggggacgggc
agtgtcaagggtgaaaagggggagaaaggagaactaggcattaagggcagtgctggattt
ggctaccctggctccaagggccagaaaggggagccgggtgaccctggcccccccgggacc
ctctcgcggcattctgatggcttggtggtggagcaggtcactggtcccccgggtccacca
gggaaggatggagcccccggcagggatggcgagcccggtgatcctggcgaagatggcaaa
cccggtgatatggggccccaggggttccccgggatgccaggggagcctggtctgaagggg
gagaagggtgagccaggcatagggccgaggggaccccctggaccacctggtcccccagga
cccccaggaccatcatccaagcatgacaagctgactttcatcgacatggagggctctggc
tttggcggtgacctggagagcctgcggggtccgcgagggccacctggtcccccagggcca
cccggagtgcccggtttgccgggtgagccgggacggtttgggatgaaccgcacagacctg
cagggaccgccagggctgccgggcagggatgggacccctgggtccccgggtcctcagggt
cctcctggaagagatggggcagctgggcagccagggcccaaaggagagcagggtgatgtg
ggtgaccttggcctccctggcgcaccaggacccaagggcagcaagggagaaacaggacca
gcaggagccccaggagaaatggggttagctggccttcctgggcccattggaccccgaggg
cagccagggccccccggtcccccagggccaccagggctgggctacgaggctggatttggt
gacatggagggctcggggctgccatttgctgccagctcccctggaccacctggacccgaa
ggaccacagggggtgccaggactgccgggggtgaagggggaggtcggcagccccgggcag
cctggcttgccaggaccaaagggagatactggtgtgcctggcgtggacggccgccctggc
ctggagggcttccccggaccacagggacccaaaggtgacagaggcagtcccggtgaaaag
ggtgagcgaggccaagacggtgtggggctgcctggcccccctggtccacctggtcccccc
ggacaggtcatcgctgtctcaggcaaagataagtcttcggtggctttgcctggtccagag
ggcagacagggtcacgctggcttcccgggcccggtgggaccgaaaggagaccggggatcg
tccggtccccagggctccccagggttgaagggggagaagggggagcctggcgtcatcatc
agccccgatgggaccgtggtcacggcgcaggtgaaaggagaaaagggggagccagggctg
cggggaccgatgggaccatcgggtccgcagggacgagcagggatgaagggagagatcggc
tttccaggcagacccggacgtcctggcatgaatgggctgaagggcgagaagggtgacccc
atggatgtcagtagcgtgctgggcttgcagggtcccccgggacccccagggcctccaggg
ccccctggaccacctggaagcatagcctatgacagcagcaatgccttcagcgactctggc
catcctgtgctgccagctttccctggtttccaccagtttccaggacaaaagggagagaag
ggtgatgccggagccccaggacccccaggccacttctcctatgacctgagtcactttggt
gccaacctgcagggtgacaagggggagccaggtcccaagggcgagaagggcgagccaggc
aacaccccactctatggtcccagcgtctccgggctgccagggcctccagggccccagggc
taccctgggctgccaggtcccaagggggacagtatcgttgggccgccagggcctcctgga
cctcagggcccccctggtattggatatgaggggcggcaaggcccccctggccctcccggt
ccccccggtcaaccctccttcccaggcccccacagacaagctatcagcatccctgggccc
cctggaccaccggggccccccggaccaccaggcaccagtgggatgtcctttgggctgcgc
accctgccaacctaccaggcgatgctgagcgctgcacacgagctgcccgagggtggcctc
atcttcctgactgaccggcaagagctctatgtccgcctgcgtgggggcttccgccgtgtg
ctgctggaggagcacaccctgatccccagctcggctctggacaacgaggtgtatgacaag
ccccccagcattcactatgctggcccccagccccccctccagccccgtggacctctgcat
ccccttcacaaccacagcccactgcccaccgcccgcccctggcgtggggatgaggtggtg
gccaaccagcaccgcctgcccgagcaaccgctgctccaccaccagcatgagctcctcaac
agctactacatccaccgccggccagatccagcccccgtggccacccacgtgcaccaggac
ttccagcctgctcttcacctggtggccctgaatgccccactgagtggtggcatgcgcggc
atccggggtgctgacttccagtgcttccagcaagcccggcaggttgggctggctggcacc
ttccgcgccttcctctcctcccgcctgcaggacctctacagcattgtacgcagggccgac
cgtgccgctgtgcctatcgtcaacctccgggacgaagtgctcttcagtaactgggaagcc
cttttcacgggcagcggggccccactgcaagccagcactcgcatcctctccttcgacggc
cgggatatcctgcaggatgcaggatggccgcagaagagcatttggcatggctcagatgcc
aagggccggcgcttgcccgagagctactgtgagacgtggcggacagaggagcgttctgcc
accggccaagcttcctcgctggcctccggcaagctgctggagcaggtggccagcagctgc
cagcatgccttcattgtcctctgcattgagaacagcttcatgaccgctgccaaaaagtga
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