Rissa tridactyla (black-legged kittiwake): 128912906
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Entry
128912906 CDS
T09443
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128912906 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128912906 (COL3A1)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128912906 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
128912906
NCBI-ProteinID:
XP_054065649
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All DBs
Position
7:complement(37397973..37451650)
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AA seq
1459 aa
AA seq
DB search
MMSFVQKATLLILAVFQPSVILAQQDVTGCTHLGQVYADRDVWKPEPCQICVCDSGSVLC
DDIICDDQELDCPNPEIPFGECCPVCPQTTPQPTRTPGVVSRGPKGDPGSPGIPGRNGAP
GPPGQPGSPGAPGPPGICQSCPSISGGSFSPQYDSYDVKAGSAGIGYPQPITGFPGPPGP
SGPPGPPGHAGPPGSAGYQGSPGEPGQPGPPGPPGPVGMIGPVGPPGKDGEPGRPGRNGD
RGIPGLPGHKGHPGMPGMPGMKGQRGFDGKDGAKGDSGAPGPKGETGLPGANGSPGQPGP
RGPAGERGRPGNPGGPGAHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAGS
SGSPGERGEPGPQGHAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGT
SGNPGAKGSPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGIPGT
PGERGTPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGMRGLPGI
PGSPGSDGKPGPPGNQGESGRSGPPGPPGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGP
PGTPGPAGKNGDVGLPGPPGPTGASGERGEPGPAGPPGLQGLPGGPGPAGENGKPGEPGP
KGDIGGPGFPGPKGENGIPGERGAQGPPGPPGTRGGPGPAGSEGAKGPPGPPGPAGGTGL
PGLQGMPGERGAPGSPGPKGDKGEPGGKGADGIPGGRGERGNVGPIGPPGPAGPPGDKGE
TGPAGAPGPMGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGA
AGPQGGPGAPGPPGPQGTKGERGSPGGPGAAGFPGARGLPGPPGSNGSPGPPGNAGPAGK
DGPPGPPGSAGSPGSPGPAGTRGEPGSPGEKGPPGARGERGATGEPGPQGIAGGRGNIGL
PGVRGPSGPPGMAGAKGEDGKPGTNGVPGERGAPGPQGPIGQRGLPGEPGRDGNPGSDGL
PGRDGSPGGKGDRGESGSPGPPGPPGHPGPAGTSGAPGKAGERGFQGPPGPPGSTGPAGA
RGPAGPQGPRGDKGEPGERGSNGIKGHRGFPGTPGLPGPPGPLGPQGAIGGPGASGARGP
PGPAGPPGKDGTSGYPGPIGPPGPRGNRGESGPAGPPGAPGLPGPSGPPGPCCGGGAAIM
GGEKGPVGYGYEYRDEPKENDINLADIVSSMKSINNQIENIISPDGSQKNPARNCRDLKF
CHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLNANPSTVPRKNWWTSENSGKKHVW
FGESMNGGFQFSYGDPELPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDEASGNVK
KALKLMSSTDSEIKAEGNSKFTYAVLEDGCTKHTGEWSKTVFEYRTRKTMRLPVVDIAPL
DIGRPDQEFGVDIGPVCFL
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagcaactttgctcattcttgccgtgtttcaaccctcagtt
attttggcacaacaagacgtcacaggatgtacccatcttggacaggtttacgctgacagg
gatgtttggaaaccagagccatgccaaatctgtgtgtgcgactcggggtctgttctctgc
gatgacatcatctgtgacgatcaggagctggactgtcccaacccagagattccctttgga
gagtgctgtccagtttgtccacaaacaacaccacaacctacaagaactcctggagtagtc
agccgaggacccaaaggagaccctggttctcctgggattccgggcagaaacggtgcccct
ggccctccaggacagccagggagtcctggagctcctggtccccctgggatctgccagtcg
tgtcccagtataagcggaggcagtttttctccacagtatgactcctatgatgtgaaggcc
ggttcagctggtatcggttacccacagcccattactggctttccaggacctcctggcccc
agtggcccccctggcccgcctggtcatgcaggtccccctggctctgctggataccaaggt
tcccctggagaaccaggacaacctggccctcctggacctccaggccccgttggaatgata
ggcccagttggtccaccaggaaaagatggagaaccaggaagaccaggcagaaacggagat
cgtggaatccctggattaccgggtcacaagggacaccctggaatgcctgggatgcctggg
atgaaaggtcaacgaggttttgatggaaaagatggtgccaaaggtgacagcggtgctcct
ggtccaaagggtgaaactggtcttcctggagcaaacggatcaccaggccaaccgggacca
agaggtccagctggtgaaagaggaagacctgggaatcctggtggccctggtgcccatggc
aaagatggatctccgggagcagcaggaccacctggtcccccaggtccccctggaactgct
ggatttccaggatctccaggttttaagggtgaagccggtcctcctggtcctgctggttcc
agtggtagtcctggagagagaggagaacctggtcctcagggtcatgctggaccacccggg
cctcagggccctcctggaagagctggaagccctggcaacaagggtgaaatgggaccttct
ggtattcctggtgctcctggtctgccaggaggccgcggtcttcctggtcctccaggtaca
agtggaaaccccggagcaaaaggctctccaggagaacctggtaagaatggtgcaaaagga
gatccaggcccaaaaggcgagcgtggtgaaaatggtaccccaggtgctcctggacctcct
ggtgaggaaggcaaaagaggtgcaaacggtgaacccggccagaatggcatacctggtaca
cctggagaaaggggcacccccggtttccgtggcttacctggtagcaatggacttccaggt
gaaaagggtccagcaggtgaacgtggtagcccaggtcctcctggccccagtggacccgca
ggagagcgtggacaggatggaggcccaggtcttcccggaatgagaggtttgccgggaatt
ccaggaagccctggaagcgatgggaaacctggccctccaggtaatcagggtgaatccggc
cgctctggtccacctggccccccaggcccacgtggccagccaggggtaatgggtttccct
ggtcccaagggcaatgagggtgcaccaggtaagaatggagaaagaggccctggtggacca
cctggaacacctggtcctgctgggaagaatggtgatgttggcctcccgggtcctcctgga
cctactggtgcttctggggagagaggagaaccaggaccagcaggtccacctggcctccag
ggattgcctggtggaccaggaccagctggagaaaatggaaaacctggagaaccaggacca
aaaggtgatattggaggacccggattcccaggccctaagggtgaaaatggtatcccaggt
gaacgtggtgcacagggtcctccaggacctcctggaacaagaggtgggccaggtcctgct
ggctcagaaggtgccaagggtcctcctggaccccctggtcctgctggaggcacagggctg
cctggtttacagggaatgcctggagaaagaggagctcctggaagtcctggaccaaaaggg
gataagggagaacctggtggcaaaggtgctgatggcattcctggtggaagaggagagaga
ggtaacgtaggtcccatcggtcctcctggtcctgccggcccacctggagataagggagag
actggtccagcaggtgccccaggtccaatgggttcccgtggaggtcctggtgaacgagga
gaacaaggtcttcctggacctgctggtttccctggagctccaggccaaaatggggaacct
ggtgggaaaggagaaagaggcccacctggtctaagaggagaggctggaccccctggagct
gcaggtccacaaggtggtcctggtgcaccaggtccacctggtccccaaggaacaaaagga
gaacgtggatctcctggaggccctggtgctgctggtttccctggtgctcgtggtctacct
ggtccccctggtagcaacggtagtccaggtccccctggtaacgcagggcctgcaggcaag
gatgggcctcccggaccccctggtagtgctggttctcctggcagtccaggacctgctgga
acgagaggtgagccgggctcaccaggtgaaaaagggccaccaggtgcacgaggagaaagg
ggagcaacaggagaaccaggtcctcaaggcatcgctggtggccggggtaacataggtttg
ccaggtgtgcgtggcccaagcggtccacctggtatggcgggtgccaagggtgaagatggt
aaaccaggcaccaacggtgtcccaggagaacgcggtgctcctggtccacaaggtcctatt
ggacaaagaggcttacctggagagcctggcagagatggtaaccctggctcagatggcttg
cctggacgtgatggatccccaggaggcaaaggtgaccgtggtgaaagtggctctcctggc
cctcccggacctcctggtcaccctggacctgcaggtaccagtggtgcacctggaaaagct
ggtgaaagaggatttcagggtccacctggccctcctggctctactggtcctgctggtgct
cgaggtcctgctggtcctcaaggtcctcgtggtgataaaggtgaacctggtgaaagaggt
agcaatggcataaagggtcatagaggatttcctggtacccccggtctccctggtcctccc
ggtcccctgggtccacaaggtgcaattggaggtccaggagcttcaggtgcaaggggtccc
ccaggaccagctgggccacccggaaaagatggtacaagtggctatccaggtccaattggt
cctcctggccctcgtggtaacagaggtgaaagtggccctgcaggtccaccaggtgcgcct
ggtcttcctggtccttctggtcctcctggtccgtgctgtggtggtggtgccgctatcatg
ggtggtgaaaaaggtccagtgggctacgggtacgaatatcgagatgagccaaaagaaaat
gacatcaatctggctgacatcgtatcttcaatgaaatcaattaacaaccagattgaaaac
atcattagtcctgatgggtcacagaagaatccagctcgtaactgcagagatctgaaattc
tgccatcctgagctcaagagcggagagtattggattgatcctaaccaaggctgcaagatg
gatgctattaaagtatactgtaatatggaaactggtgaaacatgcctcaatgctaacccc
agcactgtgccaaggaaaaactggtggaccagtgaaaacagtggaaagaaacatgtttgg
tttggagaatctatgaatggaggcttccagttcagctacggagatcctgagcttcccgag
gatgtctcggaagttcagctggccttcctccgcattctctcaagccgtgcctcccagaac
atcacctaccactgcaagaacagcattgcctacatggacgaagccagtggaaatgttaaa
aaagctctgaaactgatgagctctacggacagtgagatcaaggctgaaggaaacagcaaa
ttcacatatgctgttctggaagatggctgtactaaacacactggtgaatggagtaaaacg
gtctttgaatacagaacgcgcaagacaatgaggttgcctgtggttgatattgcaccctta
gatattggtcgtcctgatcaggaatttggcgtggacattggcccggtctgcttcttataa
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