Rissa tridactyla (black-legged kittiwake): 128913502
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Entry
128913502 CDS
T09443
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtd03000
]
128913502 (RC3H1)
04121 Ubiquitin system [BR:
rtd04121
]
128913502 (RC3H1)
Transcription factors [BR:
rtd03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128913502 (RC3H1)
Ubiquitin system [BR:
rtd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128913502 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
128913502
NCBI-ProteinID:
XP_054067156
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All DBs
Position
8:complement(28050355..28131589)
Genome browser
AA seq
1131 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGSV
GLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQL
SSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASK
TSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIA
PDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLEL
LANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMC
RDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSE
EGGVDLPNRKTTALPNGIVSTGSTVTQLISRGTDSGYETALKPGKMDHLSSSAPGSPPDL
LESVPKSSISALPVNPHPVPARAPTDLPSVSVTKQLQMVPRGSQLYNTQQADMFYQDPRG
AAPPFEPAPYQQGVYYPPQSMSRFVRPPPSAPEPGPAYLDHYPPYLQDRVVSPQYTQPQQ
YPPMGQPIYPPHYDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVPSYIPESRDRYQQTE
GYCPVAPHLSQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHS
EEIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMAN
VDSKAMRDQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQ
GATTKSIISDYSPYGTHGGWGGAPYSPHQNIPSQGRFSDRERLSMSDVAGHGKQLPSAER
EQQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPAPPPKWSGMISSE
QLSLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLEPQSKVPAEDLALTF
SSDVPNGSALTQENIGLLSNKTASLSLSEDPEGGGDNHDSQRVGVTPTSAP
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccaatttgcacacagacc
ttcgacgaaacaatccggaagcccatcagcttgggttgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgcccttttgaccagaccactatcaatacagac
attgaactccttcctgtgaactcagccttgctgcagctagtgggtgctcaggttcctgag
cagcagccgattactttatgtagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattagcgttgtacctcaaaccactcagcagcgcgagaggtagtgtg
ggtcttaacagtactactcagagcgtgctaagtcgtcccatgcaaaggaaacttgtgaca
ttagttcattgccagctggtggaggaagaagggcggatcagagccatgcgtgcagcacgg
tcgcttggggaaagaacagtcacagagctcattcttcagcatcaaaaccctcagcagctc
tcttccaacctctgggctgcagtgagagccagaggctgccagttccttggaccagcaatg
caagaggaagctttaaagctggttctgctggctctggaagatggatctgcgttgtcacga
aaggtcttggttctctttgtggttcagaggctggagccgcgatttcctcaggcttctaaa
actagcattgggcatgttgtccagcttctttacagagcctcgtgctttaaggtgacaaag
cgagatgaggattcctccctgatgcaactgaaagaggagtttcggacttatgaagctctg
agaagggaacatgattcccagatagttcaaatagccatggaagcaggtttacgcattgca
ccggatcagtggtcctcactgttatatggagaccagtctcacaaatcccacatgcagtct
atcattgacaagttgcagaccccagcctcgtttgcacagagtgttcaggaattaactatt
gctcttcagaggactggagatccagctaacctgaatcgccttcgacctcacctagagctc
ctggcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaac
ggactagttgctgtgaggactgtggttcatggcttagttgactacatccagaatcacagc
aagaagggaacagatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgc
cgagacatgaaacagagaggaggatgcccccgaggggccagctgcacctttgcacattca
caggaggagctagaaaaattccgtaaaatgaacaagcgtctggttcccagaagacccctg
agtgcctccctgggccagctgaatgaggtgggcctaccttcaggagctatcctctcggag
gaagggggagtggacttgcccaataggaaaactactgctctgccaaatggaattgtgtca
acaggcagcacggtgacgcaacttatttctcgagggacagactccggttatgaaactgct
ctgaagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgactta
ctggagtctgtccccaagagctctatttctgccttaccagtgaaccctcatcctgtgcct
gctcgggcaccaacagatctgccttcggtgtctgtcaccaagcagttgcaaatggttcca
cgagggtctcagttgtataatactcagcaagcagatatgttttatcaagatcctagagga
gctgccccaccatttgagccagcaccctaccaacaaggagtttactatccccctcagtcc
atgtctcgctttgtccgacctcctccatcagctcctgaacctggtccagcttatttagac
cattacccaccctaccttcaggatcgtgtggtcagcccacagtacacgcagccacaacag
tatcctcctatgggacaacccatatacccgccgcactatgacagccgtcgcgtatatccc
cctgtccagccatatcagcgagaggagattgtccgaggaagccccgtacccattgaaatt
ccacaagcagctgtaccttcctacatacctgaatccagagacagataccagcaaacagag
ggttattgcccagtggctccacatctcagtcagatcagaccttcatgccacaggcctcat
cccagcctggatgaacttcaccgacgaaggaaagagatcatggcccagctagaagagagg
aaggtgatttctccacctccttttgcaccatcaccaaccttgcctcatccttttcattca
gaggagatttttgtttttgtacagtacttggatgaagacctgaaggtagctgggaaatac
aaaggaaatgactacagccaatactctccctggtcctgtgacaccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaat
gtagatagtaaagccatgcgtgaccagcgattagacatgcagcgaagagcagcagagact
ggtgatgatgacctcattccatttggagaccgaccaactgtgtcgagatttggggctatc
tctcgtacttccaaagcgatgtaccagaattctggtcccatgcaggccatggcggttcag
ggagctaccaccaaatcaatcatttcagactacagtccttacggaactcacggtggctgg
ggaggcgctccatattctcctcatcaaaatataccttctcagggacgcttcagtgacagg
gagagactgtccatgtcggatgtggctgggcatgggaaacagttgccctcagctgaacga
gagcagcagctgcgcatggagctgcagcaagtagaccatcagattagccagcagacacaa
atgcgaggactagaggctgttagtaacaggctgctgttgcagagggaggcgactaccctg
gcaggccaaccacagcccccagccccacctcccaagtggtctgggatgatctcaagtgag
cagctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctg
agcatggagagccagtcctcactggatataaaaaacaaactgggcaccactaaacagaca
gaaaatggacaattagaaccacaaagcaaggttccagctgaggacctcgcattgacattc
agcagtgatgttccaaatggatcagccttgacacaagagaacattggcctcctgtcaaac
aagacggcgtctctgagcctgtcagaggacccagagggaggaggagacaaccatgactcc
cagagagtgggagttacacccacgtctgctccatga
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