Rissa tridactyla (black-legged kittiwake): 128913586
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Entry
128913586 CDS
T09443
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128913586 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128913586 (SMG7)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128913586 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
128913586 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
128913586
NCBI-ProteinID:
XP_054067389
LinkDB
All DBs
Position
8:complement(27761656..27815985)
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AA seq
1192 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTRWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYP
LPAVKVSMDWLKLRPSVFQEAVVDERRYIWPWLISLLNSFQPHEEDLSNNNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQAITGDKEGQQRRIRQQRLIFTGKWIADNQPRLIQCENEV
GKLLFLTEIPELLLEDPSEAKESLALQETSIAEPLSTDGSPGLKSVLSSGRSLNNNCDAG
EKPMVTFKENIKPREINREQGRIYPPKDVGRERRDYSKGIVANKNDGKKDNNKRKNETKK
CGLDKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQASSSQFIPIHHPGAFPP
LPSRPGFPPPTYVVPPPVAFSMSTGYTFPGGVSVPGTFLQPTAHSPAGNQVQGGKQSHIP
YSQQRPSGPGPMTQGPQQTPPPSQQPLSSLPAQATAQSAGQLQVQALAQQQQQQSPTKAV
QGLGKSPPHHSGFQQYPQTDSSKQLWNPAQVQGSLGKIMPVKQSYYLQAQDPLKLFEQSL
QPPVMQQQPLEKKMKPFPMEPYNQNPSEVKVPEYYWDSSYGMADNRVMAQQSNMDRRGKR
QGVFRPEQDAVSRMTFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLAS
LPGRSLFKSLLEKPSELMSQSSSFLSLSGFSLNQERYPNNSMFNEVYGKNMNTSTKTEVT
PSVAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFS
NFGPIGTPDNRDRRVADRWKTDKPAMGGFGLDYLPATSSSSESSWHQPSAPSGTWAAQGP
PAMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgtgcgcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcgaagctgggtccagcagaagtctggacatccagacaggctctacaggacttatat
cagaaaatgctagtgaccgatttggaatatgctttagataaaaaagtggagcaggacctt
tggaatcatgcctttaaaaatcagatcacgacgctacagggtcaggcgaaaaatagagca
aatccaaatcggagcgaagttcaggcgaacctttctctgttcttagaggcagctagtggc
ttctacacacagttattacaggaattgtgcacagtttttaatgtagacttgccatgtcgt
gtaaagtcttcccagctgggaatcattagcaataaacagacgcacaccagcgccatagtg
aagccgcaatctagctcctgctcttacatctgccagcactgccttgtccaccttggagat
attgctcgctataggaaccagaccagccaggcagagtcttactacagacatgcagctcag
cttgtcccttctaatggtcagccttataatcagttggctattctagcttcctccaaagga
gaccacttgaccacaattttctactactgcagaagcattgctgtgaagtttcctttccca
gctgcctccactaacttgcaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagactcgatggagcgtgtctgacttcatcaaggcatttattaaattccatggccatgtg
tacctgagtaagagcttggagaagctgagccctcttcgagaaaagctggaagagcagttc
aagaggttgttattccaaaaggccttcaattctcaacagttagtacatattactgttatc
aatctgtttcaactccatcacctgcgagacttcagcaatgaaacggagcagcacagctac
agccaggatgagcagctctgctggacacagttactggctctcttcatgtcctttcttgga
gttctgtgcaagtgtcctttacaaaatgactaccaggaggactctggggctgcgtatcct
cttccagctgtgaaggtttcaatggactggctgaaacttaggcccagtgttttccaggag
gcagtggttgatgaaagacggtacatatggccctggctgatttctcttctaaacagcttc
cagcctcatgaagaagatctatccaataacaatgcaaccccccttccagaggaatttgag
ttgcaaggattcttggctctgaggccctcgttcaggaacttggatttttccaaaggccac
caggcaattacaggagataaggaagggcaacaacgtcggatacggcagcagcgcctgatc
ttcacaggcaaatggattgctgataaccagccgaggttgattcagtgtgaaaatgaagta
ggaaagctgttgtttttgacggaaatcccagaattgttactagaggaccctagtgaagcc
aaagagagtctcgccttgcaggaaacatctattgcagagccactatctacagatgggagc
cctggactcaaatcagttctgtcctctggcagaagcctgaacaacaactgtgatgcagga
gaaaaaccaatggtcacgttcaaagagaacatcaagccacgggaaattaacagagagcaa
gggcgaatctatccccctaaagatgtaggtagggaaagacgggactatagcaaaggaata
gtagccaataagaacgatggaaagaaggataacaataaaagaaagaatgagaccaagaaa
tgcggcttggataagatgcaggaagcaggaaagcagaacgtggcagttcaggtgaaatcc
cagacggagatgaggaagactccggtgtctgaagccaggaaaacacctgtaactcagact
ccaagtcaggccagcagttctcagttcatccccattcatcatccaggagccttccctccc
cttcctagccggccagggtttccacctccaacctacgttgtcccccctcctgtggctttc
tccatgagcacagggtacaccttcccaggtggtgtttctgtcccaggaaccttcctccag
cccacagctcactcgcctgcaggaaaccaggtgcaaggtgggaaacagtcccacattcct
tacagccagcaacggccctccggaccagggccaatgacccagggacctcagcaaacgcca
cccccttcccagcaacccctctcatctttaccagctcaggcaacagcacagtccgcaggc
cagttacaggtccaagctctggcccagcaacagcagcaacagtcccctacgaaagctgtc
cagggcctggggaagagcccaccacaccactccggattccagcagtatccgcagacagac
tcatcaaagcagctctggaacccggctcaagtccaaggctcgctggggaagatcatgcct
gtaaagcagtcctattacctgcaggcccaggaccctctaaaattatttgaacagtcatta
cagccacccgtgatgcaacagcaacctttggagaaaaaaatgaagcctttcccaatggag
ccatataaccaaaacccctcagaagtcaaggtgccagaatattactgggactcttcctat
ggcatggctgacaacagggtgatggcacagcagtctaacatggaccgcaggggaaaacgg
caaggagtcttccgcccggagcaggatgctgtctccaggatgacctttgaggaccccaag
agctcccctctgcttcctccggacctgttaaagagtctggctgccttggaggaggaggaa
gagctgattttctctaatcctcctgatctttacccagctctactggggcctctcgcctct
cttcctggacgaagcctctttaagtccctgctggaaaaaccatcggaattgatgtctcag
tcatcgtctttcctgtccctcagtggcttttctcttaatcaggaaagatatccaaataac
agcatgttcaatgaggtatatgggaaaaacatgaataccagcacaaaaacagaagtcacc
ccttcagttgcccatcaggagacttcactatattctctctttgaagggactccgtggtct
ccatcccttccagccagctcagatcattcgacaccagccagccagtcgcctcactcctcc
aaccccagcagcttgccaagctcccctccaacccataaccacaattctgttcccttctcc
aactttggacccattgggactccagacaacagagacaggagagtcgcagaccgctggaaa
acagataagccagcaatgggagggtttggtctggactatctcccagcaacgtcgtcatct
tcagagagcagctggcaccagcccagtgctcccagtggcacctgggcagcccaaggccct
cccgctatggaggactcctcagctgtgcttatggagagcctgaagtccatctggtccagt
tccatgatgcaccctggaccctcagccctggagcagctgttaatgcagcagaagcagaag
cagcaacgcggacaaggcgccatgaacccgccgcattga
DBGET
integrated database retrieval system
