Rissa tridactyla (black-legged kittiwake): 128913620
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Entry
128913620 CDS
T09443
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128913620 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128913620 (PARN)
Enzymes [BR:
rtd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128913620 (PARN)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128913620 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
128913620
NCBI-ProteinID:
XP_054067522
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All DBs
Position
8:complement(11979536..12039700)
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AA seq
577 aa
AA seq
DB search
MDFLLFQFGLCTFKYDQTEEKYIMKSFNFYIFPKPFNRSSPDIKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLAYTSPNATKCPVTIPEDQKKFI
EKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVI
SKVNEEERKRREQQKQAKEQEELNDAVGFSRVVHAITNSGKLVIGHNMLLDVMHTIHQFC
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKVE
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSELIEPFFNK
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLKT
QCTPYVSPSRYYCVNSFTGTTTVGKRSMSPIQEETGSDDMEEGDSQDSEYDQTDSCADSL
PDGKKRARKFKKIKTEQVPAGTLTSSSTGIFEVPETW
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggactttttgctctttcagtttggcctttgcacttttaaatatgatcaaacagaagaa
aagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagttca
ccagatatcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaaggattt
gattttaataaagtttttcgcaatggaattccgtatttaaatcaggaagaagaaagacag
ctaagggaacagtatgatgaaaaacgttctcaggccaatggtgcaggatctctagcatac
acttctcctaatgccacaaagtgtcctgtgacaattcctgaagatcagaaaaaattcatt
gagaaagtagtggaacagatagaagacttattaaagaatgaagaaaatgaaagtttggaa
ctggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaagtat
ccaaaaggtatccatgttgaaactctggagtcggataagaaggagagatatattgttatt
agtaaggtaaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaacag
gaagaattgaatgatgcagtaggattttccagagtcgttcatgccatcactaattctggc
aagcttgttattgggcacaatatgctactggatgttatgcataccatacaccagttctgt
tgtcccctacctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttcctcgg
ctattggatactaaactgatggcaagcacacaaccttttaaggagatcattaataataca
tcccttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagttgaa
agtgcagaagggtttccaagttatgatacagcttctgaacaacttcatgaagcaggatat
gatgcctacattactggactgtgcttcatctccatggctaatttcctgggttcattcctc
agtcctccgaaaaaccatgtgtctgctagatcagaactcattgaacctttttttaacaag
ctatttcttatgagagtaatggacataccgtatctcaatttggaaggaccagacttgcag
ccaaaacgagatcatgttcttcatgttacttttccaaaagagtggaagactagtgacctt
taccagcttttcagtgcctttggtaacattcaggtttcgtggattgatgatacatcagca
tttgtatcactgagccagccagaacaagtacaaatagctgtaaacaccagcaggtatgct
gaaagttataggatccagacatatgcagaatatgttgagaaaaaacatgaagaaaaacaa
gcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaaact
caatgcacaccttacgtttccccgagtcgatactactgtgttaacagttttacaggtacc
actacagtgggaaagagaagcatgagtcctattcaggaagaaactggttctgatgatatg
gaagagggagacagccaagattcagaatatgatcagacagactcctgcgcagactccctt
ccagatggtaagaagagagccagaaagttcaaaaagatcaagacagaacaagttccagca
ggaactctcacaagtagttccactggaatttttgaagtccctgaaacatggtag
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