Rissa tridactyla (black-legged kittiwake): 128913943
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Entry
128913943 CDS
T09443
Symbol
DSCAM
Name
(RefSeq) cell adhesion molecule DSCAM isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtd04515
]
128913943 (DSCAM)
Cell adhesion molecules [BR:
rtd04515
]
Immunoglobulin superfamily
DSCAM family
128913943 (DSCAM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
Ig_5
C2-set_2
Pur_ac_phosph_N
Ig_4
C1-set
V-set_CD47
Sp38
Interfer-bind
fn3_2
C2-set_3
ChitinaseA_N
DUF6377
Adeno_E3_CR1
DUF4446
Motif
Other DBs
NCBI-GeneID:
128913943
NCBI-ProteinID:
XP_054068320
LinkDB
All DBs
Position
1:100339609..100729846
Genome browser
AA seq
1873 aa
AA seq
DB search
MRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLVSGPRFLITSTGALYILDVQNEDGLYNY
RCITRHRYTGETRQSNSARLFVSDPANSAPSILDGFDHRKAMAGQRVELPCKASGHPAPK
YRWLKDNVPWEPDSRFRQTVTGLLIENTRPSDTGNYVCEVWNNYGTAEMIGRLYVKQPLK
ATISPRKVKSSVGSQVSLSCSVTGTEDQELSWYRNGEIINPGNNVRITGVNRENLIMDGM
AKSDGGAYQCFVRKDKMSAQDYVQVVLEDGTPKIISAFSEKVVSPGEPVSLMCNVKGTPL
PTITWTLDEDPIVKDGSHRISQIITSEGNVVSYLNISNTQVRDGGVYRCTANNSAGVVLY
QARINVRGPASIRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFEN
NGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFI
PCVVVSGDLPITITWQKDGRPIPASLGVTIDNIDFTSSLRISNLSLMHNGNYTCIARNDA
AAVEHQSQLIVRVPPRFVVQPSDQDGIYGKAVILNCSAEGYPVPTIVWKYSKGAGVPQFQ
PIALNGRIQLLTNGSLLIKHVLEEDSGYYLCKVSNDVGADVSKSMYLTVKIPAMITSYPN
TTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPT
VREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIREVRARSIALRWTMGFDGNSPI
TGYDIECKNKSDSWDSVQRTKDVSPQLNQATIIDLHPSSTYNIRMYAKNRIGKSEASNEL
TITTDEAAPDGPPQDVQLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSAGGNFQF
NIISIDTTGDSEVYTLNNLKKFTQYGMVVQACNRAGIGPSSQEIITTTLEDVPSCPPGNV
QATATSPETISISWSTLAKETLNGILQGFRVIYWANLLDGELGEIKNVTTTQPSLELDGL
EKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASTVFVSWLPPLKL
NGIIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTAAGRGNSSEI
ITVEPLAKAPARILTFSGTVTTPWMKDIVLPCKAVGDPAPTVKWMKDSNGTPSLVMIDGR
RSIFSNGSFVIRTVKAEDSGYYSCVASNNWGSDEIILNLQVQVPPDQPRLTVSKTTSSSI
TLSWIPGDNGGSSIRGYILQYSEDNSEQWGSFPISPSERSYRLETLKCGTWYKFTLTAQN
GVGPGRISEIIEAKTLGKEPQFSKEQELFASINTTRVRLNLIGWNDGGCPITSFTLEYRP
FGTTVWTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQAKFATLNYDGSTIPP
LIKSVVQSEEGLATNEGLKMLVTISCILVGVLLLFVMLLIVRRRRREQRLKRLRDAKSLA
EMLMSKNTRTSDTLNKQQQTLRMHIDIPRAQLLIEERDTMETIDDRSTVLLTDADFGETS
KQKSLTVTHTVHYQSVSQATGPLVDVSDARPGTNPTTRRSAKTGPTARNRYASQWTLNRP
HPTISAHTLTTDWRLPTPRPAGSVDKESDSYSVSPSQDTDRARSSMVSTESASSTYEELA
RAYEHAKMEEQLRHAKFTITECFISDTSSEQLTAGTNDYTDSLTSSTPSESGICRFTASP
PKPQDGGRVMNMAVPKAHRPGDLMHLPPYLRMDFLLNRGVQGTSRDLGLGQACLEPQKSR
TLKRPTVLEPIPMETSSTREVQSWQPGAVATLPQREGAELGQAAKMSSSQESLLDSRGHL
KGNNPYAKSYTLV
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcaatgtagcagtgttcaagtgcattatcccctcctctgtggaggcatacatc
actgttgtctcatgggagaaagacacagtctcgcttgtctcaggacctagatttctcatc
acatccacgggagccttgtatattttagacgtacagaatgaagatggactgtacaactac
cgatgtatcacaaggcacagatacactggagaaacacgacaaagcaacagtgcaagactt
tttgtatcagatccagcgaattcagctccatctattctagatgggtttgaccaccgtaaa
gccatggcaggacagcgagtggagctgccttgcaaagcatcagggcaccccgcaccaaag
tatcgttggctgaaggacaacgttccctgggagcctgacagcaggtttcggcagacagtt
acgggtctgctaatcgagaacacgcgtccctcggacacaggcaactacgtctgcgaggtg
tggaacaactatgggactgccgagatgatagggcgactgtatgtaaaacaaccactaaaa
gccacgatcagcccacggaaagtaaaaagcagcgttggtagtcaagtgtccttgtcctgc
agcgtgacgggaaccgaggaccaggagctctcctggtatcgtaacggtgaaatcatcaac
cctggtaacaatgtccggatcactggcgtcaatcgggagaaccttattatggatggcatg
gccaagagtgatggtggagcttaccagtgctttgtgcgcaaggacaagatgtccgctcaa
gactatgttcaggtggtactagaagatggaactcccaaaatcatttctgccttcagtgag
aaagtggtgagcccaggagagccagtctcccttatgtgcaacgtgaaggggactcctctg
cctacgatcacttggacactggatgaagatcccattgtgaaggacggcagtcatcgtatc
agccagattatcacctccgaaggcaacgtggtcagttacctgaatatctctaacactcag
gtccgagatggtggagtttatcgctgtactgccaacaactctgctggagtcgtcctgtac
caggctcgaataaacgtaagagggccagcaagcattcgaccaatgaagaacatcacagca
atagctggacgggacacctacatccactgccgtgtgatcggctacccatattactccatc
aagtggtacaaaaactctaacctgctaccgtttaaccatcgccaagtggcatttgagaac
aatgggacactgaagctttcagatgtgcagaaggaagtggacgagggcgaatacacatgc
aatgtcctcgttcaaccccaactctccaccagccagagtgtgcatgtgacagtaaaagtt
ccgccttttattcagccttttgagttcccgcggttctccatcgggcagcgggtcttcatt
ccctgtgtggtggtctccggggatttgcccatcacaatcacctggcagaaggacggcagg
ccgatcccagccagcctcggggtgacgattgacaacattgacttcaccagctccttaagg
atttctaatctttcgctgatgcacaacgggaattatacctgtatagctagaaatgatgca
gcagctgtggagcaccaaagccaattaatcgtgagagtgccccctaggtttgtggttcag
cccagcgaccaggatgggatctatggaaaagctgtaattctcaactgctctgcagagggt
tatcctgttcctaccattgtctggaagtactcaaaaggtgccggagttcctcagttccag
ccaattgcattgaacggtcgtatccagcttctcacaaatggctccttgctgattaaacat
gtgctggaagaagacagtggatactacctctgcaaggtcagcaatgatgtgggagcagac
gtcagcaagtccatgtacctcactgttaaaattccagctatgataacttcctatccaaat
accaccttggcaacgcaaggtcaaaagaaagagatgagctgcacggcacatggagagaaa
cccatcatagtccgctgggaaaaagaagaccgaatcattaaccctgaaatgtcccgttac
cttgtttcgaccaaggaagttggagatgaagtgatctctactttgcagattttgccaacc
gtgcgtgaagattctggcttcttttcctgccatgccatcaattcttatggggaggatcgt
ggaataattcagctcactgtgcaagagccccccgaccctcctgaaatagaaatccgagag
gtgagagcacgcagtattgccctcagatggaccatgggttttgatggaaacagccccatc
accggctatgatatcgagtgcaagaacaagtcggactcttgggattctgttcagagaacc
aaagacgtttcccctcagctaaaccaagccactatcattgacctccacccttcctcaact
tacaacattcgcatgtacgccaagaatcgcataggcaagagtgaggccagcaatgagctc
accatcactactgatgaagcagctcccgatggtccacctcaggatgtccaacttgagcct
atatcttcacaaagcattcgggtcacctggaaggctccaaagaagcacctacaaaatgga
attattcgtggataccagataggttatcgggagtacagtgcagggggcaatttccagttt
aacatcatcagtattgataccactggggacagtgaagtttatacgctgaataacctgaaa
aaattcacgcagtatggcatggtagtccaggcttgtaaccgggctggaataggaccttct
tctcaggaaatcatcaccactactcttgaggatgtgcccagttgccctccagggaatgtg
caagccactgccacatcaccagaaaccatctctatttcttggtcaacattggcgaaagaa
accctgaatgggattctgcaaggattcagggttatctactgggccaatctcttggatgga
gagctaggagaaataaagaatgtcactactacacagccatccctagagcttgatggcctg
gaaaaatacaccaactacagcattcaggtgttggcttttacacgagctggagatggagtg
agaagtgaacaaattttcacccgtactaaagaagatgttccaggtcctccggctggtgtt
aaagcagctgcggcttcggcctccaccgtcttcgtgtcctggctccctcccctcaagctg
aacggcatcattcggaaatacactgtcttctgctcacacccctaccccacagtaatcagc
gagtttgaagcctctcccgactcattttcctacagaatccccaacctgagccggaatcgc
cagtacagcgtctgggtggtagcagtgactgctgcaggaagaggcaacagcagtgagatt
atcactgtggaaccgctagcaaaagctcctgccaggattttgacattcagtggcacagtg
acaactccctggatgaaggacattgtcctcccttgcaaagctgtgggagacccagctccg
acagtcaaatggatgaaggatagtaacgggacacccagtctagtgatgattgatgggcga
cgaagcatctttagcaacggcagctttgtcatccgtactgtgaaagcagaggactccgga
tactacagttgtgtggccagtaacaactggggatcagatgaaataattttgaatttgcag
gtgcaagttccaccagaccagccaagactcactgtatccaaaactacatcttcctctatc
actctttcctggatacctggagacaatggtggcagttctatacgaggttatattttgcaa
tactcggaagataacagtgagcagtggggtagttttcccattagccctagtgagaggtcc
taccgtttagaaacactgaaatgtggcacttggtacaagtttactctaactgctcagaat
ggagtggggccaggacgcatcagcgagatcattgaggctaaaacgcttggaaaagaacca
cagttttcaaaggaacaagaactctttgctagtatcaacaccacaagagtgagactgaac
ctgataggctggaatgatggtggctgccccatcacctccttcaccctggagtaccggcca
tttgggacaacagtctggacaaccgctcagcggacatccctgtcaaagtcctacatactg
tatgacctccaggaggcaacctggtatgaactgcaaatgagagtgtgcaacagtgctggc
tgtgcagagaaacaagccaaattcgcaacacttaattatgatggcagtacaatccctcca
ctcattaagtcagttgtgcaaagtgaggaagggctggcaaccaacgaagggctaaagatg
ctggtgaccatctcctgtatcttggttggggtcttgctgctttttgtgatgctgctgatc
gtgcggaggaggaggagggagcagagactgaagaggctgcgagatgcaaagagtttagct
gaaatgcttatgagcaagaacaccaggacatcagatacacttaataagcagcagcaaaca
ctgaggatgcacatagacattccaagagcacagcttctgattgaggagagggacacaatg
gagaccattgatgacagatcaacggttctgctcactgatgctgactttggagagacgtct
aagcagaagtcgctgactgtcacccacacagtacattaccagtctgtgtcacaagctaca
ggaccactggtggatgtttctgatgcccggccagggacaaatcctaccacaaggaggagt
gccaaaaccggacccacagctcgcaaccgctacgctagtcagtggaccctcaacagacct
catcccaccatatcagctcataccctcaccacagactggaggctgcccacccccaggcca
gcaggatcagtggacaaggaaagtgacagctacagcgtcagcccctcgcaggacacagat
cgagcaagaagcagcatggtctccacagaaagtgcctcctcaacatatgaagagcttgcg
agagcatatgagcatgcaaaaatggaagagcagctgagacatgccaagttcaccattaca
gaatgcttcatatcagacacatcgtcggagcagctcacggcagggactaatgactacaca
gacagtctgacctcaagcacgccgtcagagtcggggatttgcagatttaccgcatccccc
cccaaacctcaggatggagggcgagtgatgaacatggcagttccaaaggcacatcggcca
ggtgatctcatgcatttgccaccctaccttaggatggactttttattgaaccgtggtgtg
cagggcacgagcagagacctgggtttggggcaagcctgcttggagccgcagaaaagccga
accttgaagcgccccaccgtcctggagccgatacccatggagacgtcctccacaagagaa
gtacagtcatggcaacctggtgctgtggcaacgttacctcagcgagaaggagctgagcta
ggacaggcggcaaaaatgagcagctcccaagaatccctgctggactcccggggccacttg
aaaggaaacaatccctacgcaaaatcttacaccctggtataa
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integrated database retrieval system
