Rissa tridactyla (black-legged kittiwake): 128914102
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Entry
128914102 CDS
T09443
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtd01002
]
128914102 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtd04121
]
128914102 (USP42)
Enzymes [BR:
rtd01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
128914102 (USP42)
Peptidases and inhibitors [BR:
rtd01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
128914102 (USP42)
Ubiquitin system [BR:
rtd04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
128914102 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
128914102
NCBI-ProteinID:
XP_054068640
LinkDB
All DBs
Position
8:complement(492164..511607)
Genome browser
AA seq
1340 aa
AA seq
DB search
MTIVSKPKSSKSKKSSSRRSDKSKKPRTKKMTSRTANLSRVPPAEDPNKVSVDKGPGGAI
YCRSSQKTKPFAQRDLVINDGIAPPQRILFPPEKICMDWQQTQSVGVGLQNLGNTCFLNS
TLQCLTYTPPLANYMLSLEHTQSCHEEGFCMMCTMETHINQVLCCSNNAIKPTSVINGLK
RIGKHFHFGSQEDAHEFLCFTVDALQKACLNGSTKLDRSSQATTLIYQIFGGYLRSRVKC
LNCKAVSDTYEPFLDITLDIKAVTSVTRALEQFVKPEQLDGENSYKCSKCKKMVPASKRY
TIHRSSNVLTISLKRFANFTGGKINKDVKYPEYLDLRAYMSQSIGEPLIYALYAVLVHSG
FNCNAGHYLCFIKAGNGLWYRMNDASVDLSDIKTVLNQQAYVLFYIRRYDLTLGERAFYL
PAPSYPRSFLGQRGANSKQAGFMGPRLPPHMIKNSSRLNGNGPLKEDPNTVGVTLKRPSS
APPTACVQNWAITRPSNTDPSKNQKITISIHNKLPARQTVSQPDCLSSAVEDEDLSKPVP
SSTITNSSAAESTSNASTMAVATNVSKQEVPDEIFAEPAVNGNPKLGSDNTVHYVPETSG
KSEESKGLFKRNCNIIASNGILIGKVVRTLPNSHSACQTAEEERSQHELPKNDSLNGAIS
LDNESKENGLKLDDSACQVQPVKPSEIFFSKTNGLLETMPIALSPVPQEIILESLTYSQL
NSSSEERSVPGPQKSSENDALMETVVMEALFAYEESRKVPSNFSCEVENLFPQSDSETIS
TKEVVAESIVTKADNAHPSINGQHKVRKKSLDAEDEFFGQRESEDSRDKDKPRRSKEPEL
ISKENPLYIKGSPESEEKLGQTSSVKSDIECSSKKLASLDITDKCQDKKDTSNNYVEVPP
VNDSSITKLDKVLESQFSRENEGLSNKKCEEDKHRKKYKKKIYDSKKTDKEHYRRKREHS
DTEEREKEKQSRSKADDHSHKRRRWSRSVETNKQNRHKQEYCNDSKYRSSHNERNSPNNG
KSSGKYSRYRSRSRERTEQDRNRYYHSKGERTWSRERYYQDEPRRWEKCRYYNDYYSSHG
TRDGRERKPSYCDKDFDKSSQAYNNRSHKDYHCKSRWPHSALAREEDVHHFSSHRANVHH
CSVPQQQPDKYARERHALPPLPAHSNFEDSSRENGKEKLRNGKRKYTHTEESGSELEKKC
RKIDDQRMKKYKKVKKKKKSKDKHREKDYKLYDLDFSVLRFDNDNRKHKKKKKKKKHIRK
LKGFLEYLDPRFQKKSREKKEESGPPGGSFCEQYRHQGSNQAHKEGKPSGAGDSKKYGSV
TSSEYVTEAELTRGSLQYSN
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttagcaagccaaaatcttcaaaatctaaaaagtcatcatcaaggcggtct
gacaaatctaagaaaccccgtactaaaaaaatgacgtcacgcaccgcaaatttgagccgt
gtgccacctgcagaagatccaaacaaagtctctgtggacaaaggacctggaggtgctatt
tattgtagatcatctcaaaaaactaagccgtttgcccaaagagatctagttattaatgat
ggaattgccccgccacagaggattctttttccacctgagaaaatttgtatggattggcag
cagacccaaagtgttggagttggactgcagaacctcggcaacacctgtttccttaattct
accctgcagtgtttgacctacacgccgcctctcgccaattacatgctttctcttgaacac
acccagtcatgtcatgaagaaggcttctgtatgatgtgcacgatggaaacgcacattaac
caagtcctgtgttgctctaacaatgccatcaaacctacatctgttatcaatggccttaaa
agaataggaaaacatttccatttcggcagtcaagaggatgcacatgaattcctatgcttc
actgttgatgctttgcagaaagcttgcttgaatggaagcaccaaattggacagatcctct
caagccaccacacttatttatcaaatatttggaggatatctcagatcccgagtaaagtgc
ttgaactgcaaagcagtttcggatacctacgagccattcctcgatattactttggatata
aaggcagttacatctgtcaccagagctctggaacaatttgtgaaaccggaacaactggac
ggtgaaaatagctataagtgtagcaagtgcaaaaagatggttcctgcatcaaagagatat
acgatacatcgatcttccaacgttctcacaatatcactgaaaagatttgcgaattttaca
ggtggaaagatcaacaaggatgtaaaataccctgaatatttggatcttcgagcatacatg
tcccaatcaattggagaaccgctcatctatgctttatatgcagttcttgtacatagcggt
ttcaactgtaacgcaggacactatctctgcttcataaaggccggtaatggactttggtat
cgaatgaatgatgcctcagtagacctttctgatatcaaaacagttctcaatcaacaagct
tatgtacttttttatatcaggcgctatgatttgacactcggagaacgtgctttttactta
cctgcaccgtcttatccccgttcattccttggtcagcgaggggctaatagcaagcaggct
ggatttatgggaccacgacttcctcctcatatgattaagaattcaagtcgtttaaatgga
aatggacccctaaaagaggatccaaataccgttggtgtcaccctaaaaaggccgtcttca
gctccgccaacagcttgtgttcaaaactgggcaattaccaggccttcaaatacggatcca
tcaaaaaaccagaagatcactatcagtattcataacaagttgcctgcacgtcagactgtg
tcacaacctgactgtcttagcagtgctgtggaggatgaggatctgagcaagcccgttcct
tcatccacaattacaaattcttctgcagcagagtctacctcaaacgcatctacaatggca
gtggctactaacgtttccaaacaagaagttcctgatgaaatctttgctgagccagcagtg
aatggaaatcctaaactcggctctgataacacagtccattacgttccagaaacttcagga
aaatctgaggagtcgaagggcttgtttaaaaggaattgcaacataatagcttctaatgga
attctgattgggaaggtggtccgtaccttgccgaattcccattctgcctgtcagactgct
gaagaggaaaggtctcagcatgagctgccaaaaaatgactcactaaatggtgctattagt
ttagataacgaatctaaagaaaatggactgaaacttgatgattccgcttgccaagtccaa
cccgttaaaccttctgagattttcttttctaaaacaaacggattgcttgaaacaatgcct
atagctttgtcaccggttcctcaagaaataatcttagaatctctcacgtacagccagttg
aacagctcgtcagaggaaagaagtgtccctggacctcagaaatcttctgagaatgatgct
cttatggaaactgtagtgatggaagcactgttcgcctatgaagaatccaggaaggttcct
tccaactttagctgtgaggttgagaatctttttcctcagtcagattctgaaaccatttct
accaaagaagttgttgctgaaagtattgtaactaaagctgataacgcgcatcccagtatc
aatggtcagcacaaggtcaggaaaaaatccttggacgctgaagatgaattcttcgggcag
cgtgagtctgaagacagtagagacaaagacaaaccaagaagatcaaaagaacctgaactc
atttcaaaagaaaatcctttgtacatcaaagggtctcctgagagtgaagagaaattaggg
caaacttcctctgtaaagtctgacattgaatgtagttctaaaaaactcgcatctctagat
attacagataaatgccaagataaaaaggacacttctaataactacgtagaggtaccacct
gttaatgactcttctattacgaagctggataaagttttggagagtcaattttctagagaa
aacgagggactgagtaataaaaaatgtgaagaagataaacataggaaaaaatataagaaa
aaaatatacgactctaaaaaaactgacaaagagcactaccgaaggaagagagaacactcg
gacactgaagagagggagaaggagaagcaaagcagaagcaaagcagatgatcattcccac
aagaggaggaggtggtctcgcagtgtggaaacaaacaagcaaaatcgtcataagcaggag
tactgcaatgacagcaagtacagatcttcccacaatgaaaggaacagtccaaataacggc
aaaagctcaggaaaatattctcgttacagatcccgaagcagagaaagaacagaacaagac
cggaataggtattatcattccaaaggagagagaacttggagcagagaaagatactatcag
gatgaaccacggagatgggaaaaatgcagatactacaacgattattattcctcccatgga
acaagagacggcagagagaggaagccctcttattgtgataaagactttgacaaatccagc
caagcctacaacaacaggtcacataaggattatcattgcaaaagcaggtggcctcacagc
gcgctcgctagagaggaggacgtccatcacttcagcagccacagagccaacgtacatcat
tgttcggtacctcagcagcaacctgacaaatacgctcgggaaaggcacgcgcttccaccc
ctgcccgctcattcaaactttgaggactcttcccgggaaaatggaaaagaaaaactacga
aatggcaaaagaaaatatacccacacagaagaaagcggaagcgaactagaaaagaaatgc
cgaaagatagacgaccaaagaatgaaaaaatataagaaggtcaagaagaaaaagaagtcc
aaagataaacatcgagagaaggattacaaactttatgatttggatttctctgtgctccgc
tttgacaatgacaatcgcaaacataagaaaaagaagaaaaagaagaaacatatcaggaaa
ctgaaaggcttcttggaatatttagatccccgtttccagaagaaatcacgggagaagaag
gaagaatcgggtcctccaggcggctctttctgtgagcaatacagacaccagggcagtaac
caagcccacaaggaagggaagccttctggagcgggcgacagcaagaagtacggctccgtc
acatccagtgagtacgttacagaggccgagctcacccgtggaagccttcaatactcaaac
taa
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