Rissa tridactyla (black-legged kittiwake): 128914104
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Entry
128914104 CDS
T09443
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03430
Mismatch repair
rtd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128914104 (PMS2)
03460 Fanconi anemia pathway
128914104 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtd03400
]
128914104 (PMS2)
DNA repair and recombination proteins [BR:
rtd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
128914104 (PMS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
128914104
NCBI-ProteinID:
XP_054068646
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Position
8:531657..543672
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AA seq
877 aa
AA seq
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MEAAAPGPQPARAIKPIDRKSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDH
GAELIEVSDNGGGVEEENFEALTLKHYTSKIQDFSDLIHVETFGFRGEALSSLCALSDVT
IFTCHKSAKVGTRLVFDHNGKITQKTPFPRQQGTTVNIQQLFYTLPVRHKEFQRNIKKEY
AKMVQLLQAYCIVSKGVRINCTNQVGQGKKSSVVSTTGSASLKENIGAVFGQKQLQSLIP
FVQLPPNEAVCEEYGLDATDIPQNLYSIAGFISRCDHGVGRSTTDRQFFFINQRPCDPAK
VVKLVNEVYHLYNKHQYPFVVLNICVDSECVDINVTPDKRQILLQEEKLLLAILKTSLME
MFGSDVNKLNVNQKLLDIAGNLKKMLPEEAQKPQVETLLGSETENPSGNGKRIMTLARLR
ESFSLHQTAESNFRSPKKVKRQHSSPRQMSLDTTLCTVKTQKAVLTKKSESCHKMDSKIS
IPSGYLRKLEDNADSGFCSTSESDAGCSTPESGSCINSESVISPPEEEFCSSEEQLQNEC
LKTVGCSDKSLEGDVQVLGTEHQLNQVNDWTNQNKLSQEANSSFSRVKCFKNRSFKSEAD
DFKAGKCPEVKNTRNGMTTVDVLVEVKKKTVPLEFSMKVLAEKVKKIIQQQQKRTETQNY
RRFKAKISPGENKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDE
KYNFEMLQQHTVLQGQKLIVPQNLNLTAVNETVLIENLEIFRKNGFDFVINENAPVTQRV
KLISLPTSKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVQ
EMRKLITHMGEIEHPWNCPHGRPTMRHIVSLDLISPE
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagcagcgccgggcccgcagcctgccagagccatcaagcccatcgaccgcaag
tccgtccatcggatctgctcggggcaggtcgtgctgaacctcggcactgccgtcaaggag
ttggtggaaaacagcctggacgctggagctaccaacatcgatataaagctgaaagatcat
ggagcagaactgatagaggtttcggataatggaggtggagtggaagaggaaaactttgaa
gctttgactctgaaacattatacatcaaagatacaagatttttctgatctaatacatgtt
gaaacatttgggtttcgaggtgaagctctgagttcactgtgtgcattaagtgatgttacc
atttttacctgccacaagtctgcaaaggttgggactcgtttggtatttgatcacaatggt
aaaattactcagaaaactccttttccacgacaacaaggaacaactgttaacatacagcag
ttattttatactttgccggtgcggcataaggaatttcaaagaaacattaaaaaggaatat
gcaaaaatggtccagctattgcaggcgtactgtattgtttcaaaaggagtgcggattaac
tgcactaatcaagtcggccaagggaaaaaaagctccgtggtatccactactggaagtgct
agcttaaaggagaacattggagcagtatttgggcaaaaacagttgcagagcctcattcct
tttgttcagttacctcctaatgaagctgtttgtgaagaatatggcctcgacgctactgac
ataccacagaatctttatagcattgcaggcttcatttctcgttgtgatcatggtgttgga
aggagtacaacagacagacagtttttctttatcaaccaacgtccatgtgatccagcaaag
gttgtcaagcttgtgaatgaagtttatcacttgtacaataaacaccagtatccatttgtt
gtccttaacatttgtgtagattctgagtgtgttgacatcaatgtaactccagacaaaagg
caaattttacttcaggaggaaaagcttttattagcaattttaaaaacttctctgatggaa
atgtttggtagcgatgttaacaaactgaacgtcaatcagaaacttctggacattgcaggc
aacttgaagaagatgcttcctgaagaggcacaaaagcctcaggtagaaacgctgcttggc
tccgagactgaaaatccaagtggtaacggaaaaagaataatgactcttgccagattaagg
gagtcattctccctccaccaaacggcagaaagtaattttcgaagccctaaaaaggtaaaa
cggcagcacagctcccctagacaaatgtcacttgataccactttgtgtactgtaaagact
caaaaggctgtcttgaccaagaagtccgagagttgtcataagatggactcaaagatatca
attccaagcggatatttgagaaagttagaagataatgcagattctggattctgtagcact
tctgagtcagatgccggatgtagtacaccagaatctgggagctgcatcaatagtgaaagt
gtaattagtcctcctgaagaagaattctgcagctcagaagaacaacttcaaaatgaatgt
cttaaaactgttggatgtagcgacaaatcattggaaggtgatgttcaggtcttgggcact
gaacatcagttaaatcaagtgaatgactggactaatcaaaataagttatctcaagaagcc
aatagttctttctcaagagtaaaatgttttaaaaacagaagctttaaaagtgaagcagat
gacttcaaggcagggaaatgtcctgaagtgaagaatactaggaacggtatgacaactgtt
gatgtactggtggaagttaaaaagaaaactgtgccacttgaattctctatgaaggtttta
gcagaaaaggtaaaaaagataatacagcaacaacagaaaagaacagaaacacaaaattac
agaagatttaaagcaaaaattagtcctggagaaaataaagtagcagaagatgaattaaga
aaagagatcagtaaagaaatgtttgcaaaaatggaaatcattggccagttcaatttaggg
tttataatagcaaagttgaattctgatcttttcataattgaccaacatgctacggatgag
aaatacaactttgagatgttacaacaacacactgttcttcaaggtcagaagctgatagtg
cctcaaaatctcaatttaacagctgtaaatgaaactgtattgattgaaaacctggaaata
ttcagaaaaaacgggtttgattttgtcataaatgaaaatgctcccgtaactcaaagagtt
aaattaatctcgttgccaacaagcaaaaactggacttttggtccacaagacatagatgag
ctgatcttcatgttaagtgactgccctggagtcatgtgcaggccctccagggtcagacag
atgtttgcttctcgagcttgcaggaagtctgtgatgattggaactgcgctgaatgtgcag
gagatgagaaaactgatcacccacatgggtgagattgagcatccctggaactgcccccac
ggaaggcctaccatgagacacatagtcagtttagacttgatttcaccagaataa
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