Rissa tridactyla (black-legged kittiwake): 128914179
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Entry
128914179 CDS
T09443
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
128914179 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rtd01001
]
128914179 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rtd04054
]
128914179 (CIITA)
Enzymes [BR:
rtd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128914179 (CIITA)
Protein kinases [BR:
rtd01001
]
Serine/threonine kinases: Other
TAF1 family
128914179 (CIITA)
Pattern recognition receptors [BR:
rtd04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128914179 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_9
LRR_14
NB-ARC
NPHP3_N
nSTAND_NTPase5
Silic_transp
nSTAND3
AAA
AAA_16
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
128914179
NCBI-ProteinID:
XP_054068820
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All DBs
Position
8:complement(12554561..12585522)
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AA seq
1210 aa
AA seq
DB search
MNLFKEILPRVRNILSTATASDDRALLNLMLKEDVISKEYHQALLHEKDREDLARKISLT
FMEKWDLYLNTLVPLCCLNLCGSKPQNMTDNEPTGSKYISDSKRQIMDSAFVPESGCLDL
LHSDTYPLHLYTLLDPKSSGNEEGDFSADPDVDASNYDQFNNMDFLCTMENAENVDEWYL
CSNTREAYARIAELAEYVLKDQQEKQVEDTFAGSLLDEMATENTEKFTDIKVQKCHKRTF
LGSAEGCSEASEPKYKKIVEVPAVSAGNGNFLAMPLNSHPPRSTSQTNHHGSFSVPATNA
LERSFIIPGSSALECLPAGVKGSQENTGFADPPQQILNFVLGNGTSDVIIYPMLTSSTQT
LISPSFPVSLCGLEMFKEVRVPIISSEETFKRPKSVEAFCISLMDYFQDVCKSVAMEREV
TLDHLFIDGTFVQSQTETKTGKNSIKAMEKELVTCGLQGKEKAALKRSQIFQIPGGKDSE
TKVIVVLGKAGMGKSILVQKICQDWSNGEFSQFEFAFWFDCKQISLPEKRYSLKDLLLEF
FVKPQEGSKEIFEYILQNPTKVLLLFDGFEGLHDHENFPRCSDSQPEKDLCSIKELLSGL
IQKKILNGCTLLLTARPKDKVYQYVSKVDKTIEIVGFSPQQRELYITKYFEGLPYCDNAL
KLIKESEYLFSHCYSPLMCRFVCFLCETVLEMGDKSLPSTLTTVFLKFVQQKIISMKTDV
TAMRNQESLATLARIAWYLGEKHQNAVKSNLLPSKEVKEFALKHGFFLPFAFPRHSDSEE
EEFGSTFSDFVIQNFLGALHLMLAEEIKDKSLIKYLSFPSKKKKPYNWLDLVPRFLAGLL
FLQDDPYFCSLSNEDVKQSTKKQKTLLKYIRRLQINELCPEKLLDLLHCIYETQSNYLLQ
HVALRLKTDLSFLGVVLTPPDVHVLHYILKRSRKEFSLDLWNSSIDMQGLKDLVGLKNVA
SFRASLSDTVRLWKSLEQTKDYELLRASTEKFVLDPFKAKTMKDISDLSDLVEMQEKMIN
CVQDASGCSSYEIPAIKNLRKLEFALGPVCGLQGFLKLVEILAAFPSLQHLDLDALSENG
IGDEGAKSLSEVFPTLTSLEILNLSQNKITDVGAEKLATALPSLSSLKTLSLYNNNICDF
GAENLAKVLPAMSSLRVLDVQYNKITGVGAQQLTDSLRKCPHIKNLVMWNPTIPYGVLEH
LQQLDSRISV
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcttcaaggagatcttacctagagtaaggaatattctttcaactgctacagct
tctgatgaccgcgcattgcttaacctcatgttgaaggaagatgtgatatccaaagagtac
catcaagccttgctccatgaaaaagacagagaggaccttgcaaggaagatatctctgacc
tttatggaaaaatgggacctgtacttgaacactttggttcccctctgttgtttaaacctc
tgtggcagtaagcctcaaaacatgacagataatgagccaacaggaagcaagtacatttct
gacagcaagagacaaatcatggattcagcatttgtgcctgaaagtggctgtcttgatttg
ctgcacagtgatacttatccattgcatctgtatactctccttgatccaaagtcatctgga
aatgaagagggtgacttctctgcagatcctgatgttgatgccagcaactatgatcagttc
aataatatggatttcctgtgtacgatggaaaatgctgaaaatgtggatgaatggtatctc
tgttccaataccagagaagcttatgctagaatagctgaattagcagaatatgtgctcaaa
gaccagcaggagaagcaggtggaagacacttttgcagggagccttttggatgaaatggct
actgaaaacactgagaaatttaccgacataaaggtgcagaaatgtcacaaacgaaccttc
ttaggctctgcagagggttgctctgaagcttcagaacccaaatacaagaaaattgtggaa
gtccctgcagtgtctgcagggaatggcaatttcttagctatgcctctcaacagtcatcca
cctagatccacctcgcaaactaaccatcacgggtccttttctgttcctgctaccaatgcg
ttggaaagaagtttcataattcctggatcttcagcgctggagtgtctacctgccggtgtg
aaagggagccaagagaatacaggctttgcagatcctcctcagcagatacttaacttcgtt
cttggaaatggcacatctgatgttataatatatccaatgctgacttcttccacccaaaca
ttgatatccccaagttttccagttagtttatgtggtttagaaatgttcaaagaagtccgc
gttcccataatttcttctgaagaaactttcaaaagaccaaagtcagtggaagctttctgt
atatcacttatggattatttccaagatgtgtgcaaatctgtggccatggagcgtgaagta
actcttgatcacctgtttattgatggaacatttgttcaaagccaaactgaaaccaagact
gggaagaatagcataaaagcaatggaaaaggagctggtaacttgcggtctgcaagggaag
gaaaaggcagcccttaaaagaagccaaatatttcaaatcccaggaggtaaagactcagag
actaaagtgattgttgtgctgggaaaagcaggaatgggcaaaagcattcttgttcagaag
atctgccaggactggtccaatggagagttttctcaatttgagtttgcgttttggtttgac
tgcaaacaaataagcttgcctgagaaacgatacagcctgaaggatctgcttcttgaattt
tttgtaaaacctcaagagggaagcaaagagatctttgagtatatattgcaaaatcctact
aaagtcctcctgctttttgatggttttgaagggttgcatgatcatgagaattttcctcgt
tgctcagacagtcagcctgaaaaagacttgtgcagtataaaggagctgctttcaggactc
atccaaaagaagatactcaatggttgtactttattacttacagcaagaccaaaagacaag
gtgtaccagtatgtgtccaaagtggataagactattgaaatagtaggattttcccctcag
cagagagaattatacataaccaaatactttgaaggattaccctactgtgataatgcactg
aaattaatcaaagagagtgaatacttgttcagtcattgttacagccctcttatgtgtaga
tttgtttgttttctctgtgagacagtacttgaaatgggagacaaaagccttccttcaact
cttactacagtcttcctgaaatttgttcagcaaaagataatatctatgaaaacagatgtt
acagccatgcgaaatcaagagagtcttgctacgttagcccgtatagcctggtatcttgga
gaaaagcaccaaaatgccgtgaaaagtaaccttcttccttctaaggaagttaaagagttt
gctctgaaacatggatttttcctgccatttgcattccccagacattcagatagtgaagaa
gaggaatttgggagcacgttctctgattttgtcattcagaatttcttgggtgcgcttcac
cttatgttagcagaagagatcaaggataaaagtctaataaagtacctgtcttttccatcc
aagaagaaaaaaccttataactggttagatttagtgcctcgatttttggctggattgttg
ttcctgcaggacgacccctacttctgctccctttcaaatgaggatgtaaaacaatcaacc
aagaagcagaaaacactcttgaaatatattagaaggctgcagataaatgagctctgtccg
gagaagttactcgatcttttacattgtatttatgaaacacaaagcaattatcttttgcag
catgtggccttaaggctcaagacagacctgtcttttctgggcgtagttcttacaccacct
gatgtccatgtactgcactatattttaaaaaggtcaagaaaagagttttccttggatttg
tggaacagcagcattgacatgcaagggctaaaagacttggttggcctaaagaatgtggca
tcgttcagggcctccctcagtgatacagtcaggctctggaaatctttagaacaaacaaaa
gactacgagctgctgagagcatcaacagagaaatttgttcttgatccctttaaggcaaag
acaatgaaggacatcagtgacctttcagaccttgtagagatgcaggagaagatgatcaat
tgtgtgcaagatgcatctggttgcagcagctatgaaattcctgccatcaaaaacctcaga
aaactagaatttgcgctgggtccggtatgcggccttcagggattcctaaaacttgtggaa
attcttgcagcctttccatcacttcagcatttagaccttgatgctctgagtgaaaatggc
ataggagatgaaggagcaaagagtctgtctgaagtctttccaaccctgacatcactggaa
atactgaacttatcacagaataagataacagatgtgggtgcagagaaactagctacagct
cttccttccttgtcttcattaaagacactaagcttatacaataataacatttgtgatttt
ggagcagaaaatcttgcgaaagttcttcctgcgatgtcatccttaagagtgctagacgtt
caatataacaaaataactggtgttggagcccagcagctgactgacagcttacgaaaatgt
ccccatataaagaacttggtgatgtggaatcccaccattccctatggagttctcgaacac
cttcagcagctggactctaggatcagtgtgtag
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