Rissa tridactyla (black-legged kittiwake): 128914253
Help
Entry
128914253 CDS
T09443
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128914253 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128914253 (COL11A1)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128914253 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
128914253
NCBI-ProteinID:
XP_054068991
LinkDB
All DBs
Position
8:33457244..33617164
Genome browser
AA seq
1807 aa
AA seq
DB search
MEMQRWSIRWKTRRWPWDSAVTVLITFAILLRAAEVRGAEPVDVLKALEFHNSPEGVSRT
AGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPGGDFPEDFSILLTVKPKKGIQSFLLS
VYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVT
MIVDCNKKTTKPLERSDKTVVDTNGITVFGTRILDEEVFEGDIQQLLIIADPRAAYDYCE
HYSPDCDSPVPNAAQAQDPQVDEYAPEDFIEYDYEYGDADYKETDSVTEGPPLFEETVAQ
TEANVVDGFQEYSIAENDYGPQTEAPSRTTEANEQNPVEEVFAEEYITGEDYDKKAEETE
YGNRGVDLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVTGH
GAYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGL
PGADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGR
PGPVGGPGAAGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGD
RGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGT
PGPPGQPGIAGIDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGK
PGLPGLPGSDGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGE
KGEDGFPGFKGDMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGV
PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGK
PGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK
TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGK
DGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPVGSPGERGAAGTAGPIGLPGRPGP
QGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGS
KGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGL
QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGE
AGNPGPPGESGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP
PGEPGPAGQDGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGA
KGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPLGPPGL
PGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGP
PGPPGLPGPQGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPD
YMLSDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPD
GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGK
LLSYLDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSND
EEMSYDNNPYIKALHDGCASRKGYAKTVVEINTPKIDQVPIVDVMINDFGDQNQKFGFEV
GPVCFLG
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagagatggtccataaggtggaaaacgagaaggtggccctgggactcggct
gtaaccgtgctcatcaccttcgccatccttctccgggctgcagaggtcagaggagctgaa
cccgttgatgtgctaaaagcattagaatttcacaattcaccagaaggagtatcaagaaca
gcaggattttgcacaaacagaagggattcaaaaggatcggatgttgcctacagagtttca
aaaactgcacagctgagtgccccaacaaagcagctttacccaggtggagattttccagaa
gatttttcaatattattgacagtaaaacctaaaaagggtatccagtccttccttctgtct
gtctacaatgagcaaggaattcagcaagtaggtgttgaagttggtagatcccctgtcttc
ctgtttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaacagtc
aacattgctgatggcaagtggcatcgagtagctattagtgtggagaaaaaaactgttaca
atgattgttgattgtaacaaaaaaactacaaaaccacttgaaagaagtgacaaaacagtt
gtggacaccaatggcatcactgtctttggaaccaggattctggatgaagaagttttcgag
ggtgacatccagcagctgttgattatagctgaccccagagctgcgtatgactattgtgag
cattatagcccagactgtgattccccagtgcccaatgctgctcaggctcaagatcctcaa
gttgatgagtacgcaccagaagattttatcgaatatgactatgagtatggggatgcagat
tataaagaaactgattctgtaacagagggacccccactgtttgaagagacagtagcacaa
acagaggcaaatgttgttgatggatttcaagagtatagcatagctgaaaatgactatggg
ccccagacagaagctccctccagaactactgaagccaatgagcaaaatcctgttgaagaa
gtatttgctgaagaatacataactggagaggattatgataaaaaagctgaggaaactgaa
tatggaaacagaggagtagacctcagtgaatctgatctgctggtagatggagatttaggc
gaatatgatttttatgaatataaagaatatgaagagaaaccaactgattccactaatgag
gagtttggtccaggtgttcctgcagagaccgatatcacagaaacgagcgtgactggacat
ggggcttacggagaaaaaggccaaaagggagaaccagctgtgattgaacccggtatgctc
attgaaggaccaccaggaccaagaggacctgctggtcttacaggtcccccaggtctacaa
ggtcctgtcggtcctccaggtgaccctggtgaaaggggtccacctggtcgccccggtctt
cctggtgctgatggtttagcaggtcccccaggtaccatgttaatgttgccgttccgcttt
ggtggagatggtgagaagggcccaacaatctcagcacaggaagctcaagcacaagctatt
ctccagcaagctaggattgctatgagaggtccacctggtcccatgggactcactggaaga
ccaggtcctgtgggtggacctggagcagcaggtgctaaaggtgaaagtggtgaaccaggt
ccccagggtcctcgtggtgttcaaggtgcccctggtccgagtggaaaagctggcaaaagg
ggacgtcctggagctgatggtgccagaggaatgccaggagaacctggtgcaaagggtgac
agaggatttgatggtcttcctggcctccctggtgacaaaggtaacaggggagaccgtggc
ccacagggacctcctggcttacctggtgaggatggatcaagaggagaagatggggaagtt
ggaccaagaggtctcccaggtgaagctggtccacggggattactgggccccagaggtaca
cctggtcctcctggacaacctggcattgcaggtatcgatggaccttcaggcccaaaaggc
aacatgggtcctcaaggggaaccaggacctcctggtcagcaaggaatcccaggcccacaa
gggcttcccggtccacaaggtcctattggacctcctggtgaaaaaggacctcaaggcaag
cctggtcttcctggccttcctggttctgatgggcctcctggtcatcctggcaaagagggt
cagtctggagataaaggtgcattggggcctccaggtcctcagggtcccattggctatcca
ggtcctcgtggtgtaaagggagctgatggtgtccgtggtctcaagggatccaaaggtgaa
aagggtgaagacggttttccaggatttaaaggtgacatgggccttaaaggtgaccgggga
gaagttggtcagccgggtccacgaggagaagatggtccagaaggtccaaaaggtcgagca
ggtccatctggggacccaggtgctgctggtccagctggggaaaagggtaaacttggtgta
cctggattgccaggatatccaggaagacaaggtccaaagggctcaactggtttcccagga
tttccaggtgccaatggggagaaaggtgcaaggggattacatggtaaaccaggccccaga
ggacagcgaggaccaacaggtccaagaggctcaagaggtcccagaggtcccactggcaaa
ccaggtccaaagggtactgcaggcaacgatggtcctcctggcccaccaggtgaaagggga
ccacaaggacctcagggacctgttggattccctggaccaaagggacctccagggccacct
ggaaaagacggcttgcctgggcacccaggacagcggggtgagactggttttcaaggaaaa
actggtcctcctggtcctggtggcgttgttggcccacagggtcctactggtgagactggc
ccaattggtgaaagaggtcatccaggtcctcctggcccaccaggtgaacaaggcctccca
ggtgctgcaggaaaagaaggtgctaagggtgacccaggccctcaaggcattcctgggaaa
gatggaccagcaggtcttcgtggtttccctggagagagaggccttccaggtgctcagggt
cctgctggtctgaaaggaggggaaggcccacaaggcccacctggcccagttggctcacca
ggggaacgtggagcagcaggcactgctggcccaattggtctgccaggtcgtcctggacct
cagggtcctccaggccctgcaggggagaagggtgctcccggtgaaaaaggtcctcagggt
ccagctggacgtgatggagtacagggccctgtaggacttcctggtcccgctggtcctagc
ggatctcctggagaagacggtgacaagggtgaaattggtgaaccgggtcagaaaggtagt
aaaggcgacaagggagaaaacggccctccaggtccaccaggtctccagggtcctgttggt
gcccctggtatagctggaggtgatggggagccaggcccaagaggtcagcaagggatgttt
gggcaaaaaggtgatgaaggtcctcgaggcttccctggccctccaggccctattggctta
cagggtctccctggcccaccaggtgaaaagggtgaaaatggtgatgtgggcccaatgggt
ccacctggccctccaggtccaagaggtccacagggtcctaatggagctgatggtcctcaa
ggccccccaggctcaatcggctctgttggaggtgttggcgaaaagggtgaacctggagaa
gctggtaaccctggacctcctggagaatctggaacatctggtccaaaaggtgaaaggggg
gaaaaaggtgaggctggtccgcccggagcagctggaccaccaggtgctaaaggacctcca
ggtgatgatgggcctaagggtaacccaggtccagttggttttcctggagatcctggtccc
cctggagaacctggtccagctggtcaagatggtgttggtggagagaagggtgaagatggt
gatcctggtcaacctggtccaccaggtccttcaggtgaagctggcccacctggtccacct
ggaaaaagaggacctcctggagcaactggtgcagaaggcagacaaggtgaaaaaggtgca
aagggtgaacctggtgcagaaggggctcctggaaaaacaggtccagttggtccacaggga
cccgcaggaaaacctggcccagagggtctccggggcattcctggccctgtgggagaacaa
ggtctacctggagctccaggtcaggatggccctcctgggcctctgggtccacctgggttg
cctggcctgaaaggagatccaggttccaaaggagagaagggacatcctggtttgattggt
ctgattggacctccgggagagcagggtgaaaagggtgacaggggtcttcctggcccacag
ggatctcctggagccaagggtgatgcaggaatttctggtcctgcaggtccacttggaccc
cctggtcctcctggtttacctggtccccaaggtccaaaaggttccaaaggatccagcggt
cctgctggtcaaaagggtgacagtgggttacctggtccacctggtcctccaggtcctccg
ggtgaggtaattcagccgcttccaatccaatcacccaaaaagacaagaagatctcctgat
tacatgttatctgatgctggtgataatattctggattattccgatggcatggaagagatc
tttggttcattgaattcactgaagcaagacattgagcatatgaagtatccaatgggcact
cagaataatccggcgcgaacctgcaaagacttgcaactctgccacccagacttcccagat
ggggaatattggattgatcctaaccagggctgttctggagactccttcaaagtgtactgc
aatttcacagcaggtggggaaacttgcatctacccagataagaaatctgaaggagttaga
atttcatcatggccaaaggagaatccaggatcttggtttagtgaatttaagcgaggcaaa
cttctttcctatttggatgttgaaggcaattccattaatatggtccaaatgacattcctt
aaactactgagtgcctctgccagacaaaatttcacttacaactgtcatcagtctgtagct
tggcatgacgcatcgtctgacagctatgacaaagcactaaggttcttaggatcaaatgat
gaagaaatgtcttacgacaacaatccttacatcaaagcccttcacgatggctgtgcatca
agaaagggctatgcaaagacagtggttgaaatcaacacacccaaaatagaccaagtgcct
atagttgatgtgatgatcaatgactttggtgatcagaaccagaagtttggatttgaggtc
ggtcctgtctgcttccttggttaa
DBGET
integrated database retrieval system
