Rissa tridactyla (black-legged kittiwake): 128914465
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Entry
128914465 CDS
T09443
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03013
Nucleocytoplasmic transport
rtd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128914465 (UPF3B)
03015 mRNA surveillance pathway
128914465 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128914465 (UPF3B)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128914465 (UPF3B)
mRNA cycle factors
P-body specific factors
128914465 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF6980
Motif
Other DBs
NCBI-GeneID:
128914465
NCBI-ProteinID:
XP_054069396
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All DBs
Position
9:38816073..38823286
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AA seq
479 aa
AA seq
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MKEDKENARPKERRGGPAAGPGALLGTGTATGTDGRAGGAELDRLERPKDKKETLSKVVI
RRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFD
GYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDEKLT
STPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRK
WKEEERRKRKEAEKLKKVDRCPEKERDRSKDEPKIKLLKKPEKDEKDLEKKEKSKKLERE
TLREEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFERDREYERAQREKLRRQ
EEERRRQKERFEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSSTDKSEKVTKDDKKE
DTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEEGATKAVDQGADKKPESESSNTKEEE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggcccaaggagcggcgcggtgggcccgctgccggg
ccgggggccttgctggggacggggactgccaccggcacggacggcagggccggcggcgct
gagctcgaccgcctggagcggcccaaggacaagaaggagaccctcagcaaggtggtgatc
cggcggctgccgcccagcctgacgaaggagcagctggaggagcatctccagcccctgccc
gagcacgactacttcgagttcttcgccaacgactccagcttgtaccctcacatgttctcg
agagcctacatcaactttaagaaccaggaagacatagtcctcttcagggatcgctttgac
ggctatgtttttgtcgatcacaaaggtcaggaatatgctgccatagtagagtttgcacct
ttccaaaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaactggaactatcgaa
gatgatccagagtacaagaagtttttggaaagttacagtgcagatgatgaaaaactaacc
tccactcctgaaactttattggaggaaatagaggcaagaaacaaagagctaatagctaaa
aagactactcctttgttgaacttcttgaaaaataaacagagactaagagaagaaaaaaga
gaggagaggaggaggagagaattggaaagaaaaagacaaagggaagaagaaagaagaaaa
tggaaagaggaggagagaaggaagagaaaagaagcagaaaaactgaaaaaagtagacaga
tgcccagaaaaagaaagagacagatcaaaagacgaaccaaagattaagctacttaagaag
cctgaaaaagatgaaaaagacttggagaaaaaagaaaaatccaagaaactggaaagagag
actctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgatggggagaca
aaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagggaccgagat
agagattttgaaagagacagagaatatgagagagcacagagggagaaactgagacgccaa
gaagaggagcgtcggaggcagaaagagcgctttgagaaagagaaggtttttagaagaaaa
gaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaagaaaagtgatctt
acagactttaccagcagcacggacaaatctgagaaagtaaccaaagacgataaaaaagag
gatacaattaagagggatcgtatcagaaacaaggatcgcccagcaatgcagctgtaccag
ccaggagcccgaagccgaagcagactgtgtcagtatgaagagggtgccacaaaagccgtg
gatcagggagcggataagaaaccagagagtgagagcagtaacacgaaagaggaggagtga
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