Rissa tridactyla (black-legged kittiwake): 128914547
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Entry
128914547 CDS
T09443
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtd04121
]
128914547 (PDZRN4)
Enzymes [BR:
rtd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128914547 (PDZRN4)
Ubiquitin system [BR:
rtd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
128914547 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
zf-rbx1
TRAF3_RING
PDZ_Tricorn
Prok-RING_4
IBR_1
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
128914547
NCBI-ProteinID:
XP_054069637
LinkDB
All DBs
Position
1:complement(187210039..187459208)
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AA seq
1040 aa
AA seq
DB search
MGFDPSRFAAPVAAELQCQLCRRVLEEPLSTPCGHVFCAGCLLPWAARRRRCPLSCRPLA
AAELRPVLPLRSLVQKLEVKCDYSPRGCGRTVRLRELPAHLAACRYGPAATGTAEPEPRG
GRTPGRSGGGSAGQPRPRAEWGQRCLRALRGGSSGGGGAGAGAELKREALRWSRREKSLL
AQLSALQSEVQLTARRYQAKFGQYMSHISSITRDLAGSQPGKGGEPKPLTIMLHRENDTL
GFNIIGGRPNQNNQEESAEGIYVSKILENGPADKAEGLQIHDKIIEVNGKDLSKATHEEA
VEAFRNAKEPIVVQVLRRAPISKAHGSSQDVRLVDASTQTDITFEHIMALAKLRPSTPPV
PDICPFLLSDSCHSLHPVEHEFYEGNEYLSSLPADADRAEDFEYEEVELCRISSQEKLGL
TVCYRTDDEEDTGIYVSEVDPNSIAARDGRIREGDRILQINGQDVQNREEAVALLSSEEC
KKIVLLVARPEMQLEEGWLDDERNEFLEELNLEMLEEQHNEAMQYTANEVEQPKKHEEED
GTTDTATSSSNNHEKDSGVGPTDESLRNDESSEQENAPEEQNSATLQSKRELGHSQDTLG
SVELQCNESFVSGEYIESDFIGNPEEECERFRQLLELKCKIRNHGEYDLYYSSSTIECNR
RDQDGVEHELQLLNEELRNIELECQNIMQAHRLQKVRDQYGDIWALHDEGFRNYNTSIDV
QRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVERSPDNSLQRMISITNRKNLRSTI
VANQPPSGQSNRETTSAKTKPTEQNSAAEDAVLASESGKFTDQEKQSSEHIPYLSPYHSS
SYRYGNIPAHAKHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDSQKCAEPKMEWKVKIRSD
GTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQ
RRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTH
GAKSPDGTRVHNAFLSVTTV
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgacccgtcgcgcttcgcggcgccggtggcggcggagctgcagtgccagctg
tgccggcgggtgctggaggagccgctgtccaccccgtgcggacacgtcttctgcgccggc
tgcctgctgccctgggcggcgcggcggcggcgctgcccgctgagctgccggccgctggcg
gccgccgagctgcggcccgtcctgcccctccgcagcctggtgcagaagctggaggtcaag
tgcgactacagcccgcggggctgcggacgcaccgtgcggctgcgggagctgcccgcacac
ctcgcggcgtgccgctacgggccggcggccaccggcaccgccgagccggagccgcggggc
gggcggacccccgggcgctcggggggcggctccgccgggcagccgcggccgcgggcggag
tggggtcagcgctgcctgcgggcgctgcggggcggcagcagcggcggcggcggcgcgggg
gccggtgcggagctgaagagggaggccctgcgctggagcaggagggagaagtcgctgctg
gcgcagctctcggcgctgcagagcgaggtgcagctgacggcgcggcggtaccaggcgaag
ttcgggcagtacatgagccacatcagcagcatcacccgggacctggcgggcagccagccc
ggcaagggaggagaacccaaaccattaacgatcatgctgcaccgagaaaatgatactttg
ggattcaatattataggaggacgacccaatcagaacaatcaggaggaatctgctgaggga
atttatgtgtcaaagattttggaaaatggacctgcagacaaagcagaaggcctgcaaatt
catgacaagattattgaggtcaatgggaaggacctctccaaggccactcacgaagaggca
gtggaagcttttcgcaatgccaaggagccaatcgtggttcaggttttacgacgagcccca
attagcaaagctcatggtagctctcaggatgttcggcttgtggatgccagcactcagact
gacatcactttcgagcacatcatggctctggccaaactgaggccttccacaccaccagtt
cctgatatctgcccttttctactttcagacagctgccattctcttcacccagtggagcat
gaattttatgaaggtaatgagtatctttccagcctgcctgctgatgcagatagagcagag
gactttgagtatgaggaggtggagctgtgccgcattagcagccaggagaagctggggctg
actgtctgttacagaaccgatgatgaagaggacacggggatctatgtcagcgaggtggat
ccaaacagcattgctgccagagatggccggatccgtgaaggagaccgcattttgcaaata
aatggccaagatgtccagaatcgggaagaggcagtggcattgctctccagcgaagaatgc
aagaaaattgtgttgctggtcgcaagaccggagatgcagctggaagaagggtggctggat
gatgaaaggaatgaattcttagaggagttaaacttggaaatgttggaagagcagcataat
gaagcgatgcagtacacagccaacgaggtggagcagccaaagaaacatgaagaggaggac
ggcactacagacactgcgacctcatcatccaacaatcatgagaaggacagtggggtggga
cctacagatgaaagtttgcgtaatgacgagagctcggagcaagaaaatgcacccgaggag
cagaacagcgcaaccctgcagagcaaacgggagctgggccacagccaagacacattagga
agtgttgagctccagtgcaatgaaagctttgtgtctggggaatacattgagtctgatttc
ataggaaacccagaggaggaatgtgaaaggtttcgacagctgttggaactgaagtgcaag
attcgaaaccacggggagtacgacctgtattactcaagcagcacaatagagtgcaacaga
agagaccaagatggagtggagcatgagctgcagctactgaatgaggaactgaggaacatt
gaacttgaatgtcagaatattatgcaagctcaccggctccaaaaggtgagggatcagtat
ggagacatttgggctttacatgacgaagggttcaggaattacaacaccagcatagacgta
caaagaggcaaactggatgacatcatggagcaccctgagaaatccgacaaggacagctcc
agtgcatacaacacggccgaaagttgcaggagcactccgctgactgtggagcgatcccct
gataactctctccagaggatgatcagcataaccaacaggaaaaacctgaggagcacaata
gtggctaatcagccaccctcaggacaaagtaacagggagacaacctcagccaaaaccaaa
cccactgagcaaaacagtgctgctgaggatgcagtgctggcatcagaaagcggcaaattc
acagaccaggaaaagcagagcagcgagcacattccctacctgtctccatatcacagctct
tcttacaggtatgggaatatacctgctcatgcaaagcattatcaaagttatatgcaactg
atccagcagaagtctgctgtggaatacgcccaaagccagctcagcctggtgagcatgtgc
aaagactcgcagaagtgtgcggagcccaagatggaatggaaagtgaaaataaggagtgat
gggacgaggtacatcacaaagagaccagttcgagacagaatcctgaaggaacgtgcctta
aaaattaaagaggagcgcagtggaatgacgacagatgatgacacgatgagtgagatgaag
atgggtcgctactggagcaaagaagaacggaagcagcatttggtgcgagctaaggagcag
aggaggcggcgggagttcatgatgaggagcaggctggagtgtcttaaggaaagtccacag
agtggcagcgagggcaaaaaggaaattaacattattgaactgagtcacaaaaagatgatg
aaaaagagaaacaagaaaatcttggacaactggatgacaatccaagaactgatgacacac
ggtgcaaaatctccagatggcacaagagtgcacaatgcctttttatcagttactactgta
tga
DBGET
integrated database retrieval system
