Rissa tridactyla (black-legged kittiwake): 128914735
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Entry
128914735 CDS
T09443
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04382
Cornified envelope formation
rtd04510
Focal adhesion
rtd04512
ECM-receptor interaction
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128914735 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128914735 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128914735 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128914735 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128914735 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128914735 (COL4A6)
Exosome [BR:
rtd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128914735 (COL4A6)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128914735 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128914735
NCBI-ProteinID:
XP_054070177
LinkDB
All DBs
Position
9:36033517..36170776
Genome browser
AA seq
1703 aa
AA seq
DB search
MGRGSDPAPPAAGRAGLLVLLLLCLGAELASGGGKKSYSGPCGGRDCSAGCKCFPEKGAR
GRPGLIGLQGPIGAPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIP
GHPGQSGPRGLPGLDGCNGTTGSPGVSGSDGFPGLPGLPGRPGPKGHKGEPVFAQGGLKG
MKGENGLPGLDGISGPKGFPGPIGSAGPIGLPGLQGPMGPPGQPGPKGNMGLGFQGEKGE
KGDVGLPGPPGPPPSTGILEFMGFPKGKQGEKGEPGPQGFPGDKGLPGMPGFGGVGEKGE
KGVPGLPGARGLLGLDGSDGIPGRKGHPGVPGYPGLDGGEGMKGELGDIGPPGPPIVIDR
EGVVISGAPGDPGNPGIPGPPGDEGISGLPGLPGAPGFPGLERDGKGPGGSPGVPGVKGE
VGEPGRATIGLPGTPGRVGLPGLPGAPGLPGLPRPSFPPDTILDGRTGAPGEPGQRGLPG
ALGPKGYKGEAGDCACDGGVTRAGLKGISGPPGPSGSPGVPGIKGIGGDPGTVGAPGLRG
PPALGGQQGLPGVKGEKGDSSYATGKGARGDRGATAPRGPSGIPGTPGRDGLPGLLGPPG
PPGDGGLGFPGEKGLPGLPGSKGHRGETGSPGVGYPGPSGVRGPPGDPGMDGFRGQAGLP
GPPGVTLPCIVPGAYGPPGTHGFPGLPGPKGSKGFPGIPGQPGLHGSKGQPGSPGVIGLQ
GEPGFPGPRGEQGSQGLPGLDGTDGLPGKMGASGLAGTKGAPGDVFGAESGALGEHGRPG
LPGDKGLTGDLGFPGPKGLDGRPGLLGIKGELGNPGYSGVPGLRGPPGPGGPFGIKGKPG
PLGSPGLAGAPGLPGVKGLTGDVGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPFGQDG
RPGFSGPKGEKGSSGLLGFPGMPGLPGVPGVNGFKGTPGTAGGKGSPGAVGLQGQKGDRG
DVGPPGLPVLGPPEQALQFKGDKGDPGLAGLGGFPGPRGDKGVPGSRGQPGPPGPIGSAS
KERGLHGDPGFPGPPGQPGLPGQKGAHGIIGFPGMPGERGSDGITGTLGFPGPIGIPGPK
GDQGETVGIPGIPGAKGERGDPGFPGERGREGLKGEPGYPGNTGVNGLKGSPGDLGQEGP
AGIPGNAGLRGIPGPPGPPGQPGSVGFPGARGTAGPKGFHGFPGLNGLNGLPGTKGSPGT
PGLSEAGLKGPAGLPGPKGEEGSPGLGRGPLGFPGPKGSSGDMGPPGPVGLPGLPGKPGV
SLPSDIRGRPGDAGHPGTDGSSGLPGPPGPRGPPGPASDQGDTGNPGFPGVLGLRGTKGD
VGPTGPIGLPGASGFKGIRGEPGLMGMPGKDGPPGDPGYPGLKGEMGRRGLPGRQGAPGI
TPQPEEVTAPAGLPGLPGIDGVPGFDGDPGFQGPAGKPGTKGLPGRPGLKGRDGLPGSPG
IVGDPGPSGAPGPQGFEGVAGKPGSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPVGMNK
LWDGYSLLYVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTT
APIPMMPVDSVQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTA
AGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQSQQFVSAPP
SETLKAGQLRTRVSRCQVCMKNL
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcggcagcgaccctgccccgccggccgccgggcgcgcagggctgctggtgctg
ctgctcctctgcttgggcgcagagctggcgagtgggggtggaaagaagtcttacagtggg
ccatgtggggggcgcgattgcagtgctggatgcaaatgttttccagagaagggtgcacgg
ggtcgaccaggactgattggacttcaaggaccgataggtgcacctggatttactggcccg
gaaggtttgccgggagcaaaaggtgagagaggagcagtgggcccccctggaccagccggg
cagaaaggcgacaagggcccaatgggagttccaggattccaaggcatcaacgggatccca
ggtcaccctggacaatctggacctagaggtctgcctggcctcgatggctgcaatggtacc
actggaagtcctggcgtttctggatcagatgggtttcctggcctacctgggctgcctggt
cgtcctggcccaaaaggccataaaggagaacctgtttttgctcaaggcggtcttaaagga
atgaagggagaaaatggtcttcctggattggatggaatttctggcccaaaagggtttcca
ggtccaataggttctgcaggccctataggattaccaggtttgcagggtccaatgggtccc
cctgggcaaccaggtccaaaaggtaacatgggattaggctttcaaggagagaaaggagaa
aagggtgatgtagggctgcctggccctccaggtcccccaccatccactggaatactggaa
ttcatgggatttccaaaagggaagcaaggagaaaagggtgagccaggccctcaaggattc
cctggagacaaaggattgcctggcatgccgggttttggaggtgttggagaaaaaggagaa
aaaggtgtgcctggcttaccgggtgccaggggtcttttgggactggatggatctgatggg
attccagggagaaagggtcatccaggtgttccgggctacccaggactggatggaggcgaa
ggcatgaagggtgaattaggtgacatcggtcccccaggccctcctatcgttattgacagg
gaaggtgtagtgatttcaggtgcaccgggtgaccctggaaacccgggaatacctggtcct
ccaggagacgaagggatcagtggtttaccaggccttccaggagctccagggtttccaggc
ctggagagagatggaaagggccctggagggtctccaggtgttccaggtgtgaagggtgaa
gtgggagaaccaggaagagcaacgattggattaccaggcactcccggcagagttggttta
ccaggtctgccaggagcaccaggattgcctggtttaccacgcccttcattcccaccagac
actatcctggatggaaggactggggccccaggagagcctggacaaagagggctgccagga
gctttgggtccaaaggggtacaaaggagaggcaggtgattgtgcttgtgatggaggagtt
acaagagctggtctaaaaggcatctcaggtccaccaggtccatcaggaagccctggtgtg
cctgggattaagggcattggtggagacccaggcactgtgggtgcaccgggactgcgaggc
cctccggctttgggtggtcagcaaggtcttccaggcgttaagggagaaaaaggggattcg
tcctatgcaacaggcaaaggtgctcgtggggaccgtggtgcgacagcacccagaggacct
tcaggcatcccgggaacccctggcagggatggactgccaggcttgctaggcccaccaggc
cctccaggtgatggtgggctaggtttcccaggtgaaaaaggactgccaggattacctggc
tccaagggccatcgtggagaaactggttctcctggcgttggatatccaggtcccagtgga
gttcgtgggccgccaggtgacccaggaatggatggatttcgaggacaagcaggtcttcca
ggccctccaggtgtcaccttgccctgcatagttcctggagcatacgggcccccagggact
cacggctttccaggattgccaggtcccaaaggcagcaaaggttttcctggcattccaggc
caacctggattacatggctcaaagggacagccagggtctccaggagtaataggcttgcaa
ggggaacctgggttccctgggcctcgaggagagcaagggtcacaaggacttccaggactg
gatggaacggatggtttgcctgggaaaatgggtgcttcaggcttagctggaacaaaagga
gctcctggagatgtatttggtgctgaaagtggagccctaggagagcatggccgacctgga
ctcccaggtgataaagggcttacgggtgatcttggatttccagggccgaaaggattagac
ggaagaccaggcctcctaggtattaaaggcgaactgggtaatccaggatattcgggtgtc
cctggattgcggggacctcctggtcctggaggcccttttggcattaagggaaaaccggga
cccttggggtcacctggccttgcaggagcaccaggacttcctggagtcaaaggcctgact
ggggatgtaggtccacaaggccctgctggtatgaaaggcttcccaggtcttgatggtgct
ccaggatctcctggtgaaagaggattcttagggccacctgggccttttggtcaagatgga
cgtccaggtttctctgggccaaaaggcgagaaagggtcttctggcctgcttggtttccct
ggcatgccaggcctgcctggtgttccaggggtgaatgggtttaaaggaactcctggtaca
gctggaggaaaggggagccctggcgctgtgggactccaaggtcaaaaaggtgacagaggt
gatgtaggtccacctgggcttcctgttcttgggcctccagaacaggcactgcagttcaaa
ggagacaaaggagatcctggattagctggacttggaggattccctggacctagaggtgat
aaaggagtcccaggaagccgtggacagcctggtccccctggtccaattgggtcagcaagc
aaagagaggggtctccatggtgacccaggcttccctggtccacccggacagcctgggctg
ccaggacagaagggtgcacatggtatcataggatttccaggaatgccaggagagaggggt
tcagatggtatcacaggaacacttgggttcccaggacctattggcatccctggtccaaag
ggtgaccaaggagagactgttggcattcctggcattcctggagcaaaaggagagcgaggg
gacccggggttcccaggagagagagggagagaaggactcaagggtgaaccaggctaccca
ggaaacactggggtcaatggactcaaaggcagcccaggagatcttggccaagaaggacca
gcaggaattcctggaaatgctgggctgagaggaatccctgggccaccaggacctccaggg
cagccaggatctgttggattccctggagctcgtggaacagcgggccctaaagggtttcat
ggatttccaggtttaaatggtctgaatggcttgccaggcacaaaagggtctcctggaacg
ccaggtctgagtgaagctggactgaaaggccctgcaggtctcccaggtccaaagggtgaa
gaaggttctccaggcttgggtagaggacctctaggattccctggaccaaaaggctcatca
ggagacatgggtccccctggtcctgtgggactacctggcttgccaggaaaacctggagtt
tctcttccttctgatatacgtgggagacctggggatgctggccatccaggaactgatggg
agttcaggtcttccaggtcctccgggaccacgaggtccccctggcccagcttctgaccaa
ggtgacacaggcaatccaggtttccctggtgttcttggcttgcgaggcactaagggtgac
gtgggacccactggtccaattggactccctggggcatccggattcaaaggtataagaggt
gagcctggccttatggggatgccaggtaaagatgggcctccaggggatcctggttaccct
gggctgaaaggtgaaatgggccgtcgaggtctccctggccgacaaggggctccaggtata
actccacagccagaagaagtcacagcccctgcaggcttacctggtctgccaggaattgat
ggggtccctggctttgatggagatcctggatttcagggcccagctggaaaaccaggtaca
aaaggtctgccaggaagacctggtttgaaaggacgtgatggtttacctggatcacctggc
atagttggggatccaggaccttcaggtgccccaggaccacaaggatttgaaggtgttgct
ggaaagccgggctcacttggtttgccgggaatgcctggtcggagcgtgggcgttggatac
actttagtgaagcacagtcagtcagaccaaatcccaccttgtcccgtagggatgaacaag
ctctgggacggctacagcttactttatgtggaggggcaggaaaagtcacacaaccaggat
cttggttttgctggctcgtgtttgcctcgcttcagcaccatgccttttatttactgcaac
atcaatgaagtgtgctactacgccagccgaaatgacaagtcctactggctctccaccact
gctcctatccccatgatgccagtggacagtgttcagatcccacagtacatcagtcgttgc
tcagtgtgtgaagcaccttcccaggctgtggctgtgcacagccaggacatcacgatccca
cagtgtccccttggctggcgcagcctgtggataggatactctttccttatgcatactgcg
gctggtgcggaaggtggaggtcagtcccttgtctcgcccggttcttgcctggaggatttc
cgtgctactccattcattgaatgcaacggtgctaggggaacgtgccattactttgcaaac
aagtacagcttctggctgacaaccgttgaacagtcgcagcagttcgtcagcgctcctccc
tcagaaactctgaaagcaggacagcttcgaacaagggtcagccgttgccaagtgtgcatg
aagaacttgtag
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