Rissa tridactyla (black-legged kittiwake): 128914736
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Entry
128914736 CDS
T09443
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04510
Focal adhesion
rtd04512
ECM-receptor interaction
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128914736 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128914736 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128914736 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128914736 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128914736 (COL4A5)
Exosome [BR:
rtd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128914736 (COL4A5)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128914736 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128914736
NCBI-ProteinID:
XP_054070178
LinkDB
All DBs
Position
9:complement(35949074..36033437)
Genome browser
AA seq
1687 aa
AA seq
DB search
MEPRLWSCSLAAGCLLLLGCWGPEEAVAAACHGCTSSSKCDCSGVKGEKGERGFPGLEGQ
PGLPGFPGPEGPPGPRGSKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGP
QGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEPGEIITSLLPGQKGDPGFPGL
PGIPGPPGSMGVPGPIGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP
GPPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPQGPPGLPGGVKGEKGEQGEPGKRG
KPGKDGEPGQPGRDGLPGGPGINGAPGREGEKGEKGDTGPPGPPGIVISRPGIDATVGPK
GSKGLPGLPGAKGERGFSGRPGPPGLPGSPGITTVGPPGPPGLPGERGQKGDPGLPGVSI
PGQPGLDGPRGPPGPPGPPGPAAPSVPPGEGLCERGPPGPPGIPGQQGFTGERGQKGDQG
DTCFNCIGTGITGPPGERGLPGPPGSPGSPGFPGPKGEKGLPGLTGLVGPPGFPGSPGPP
GRPGPKGDPGDVLTSPRMKGDKGDPGFPGPPGLPGLDGTPGRDGLPGLPGPKGEPGSVAF
KGEIGIPGDPGIPGPPGDKGLPGPPGFGPQGSPGEKGIQGVSGRPGPPGVPGPKGDPGQT
ITEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLPGIPGAKGEPGIPGIGLPGPPGPKGFP
GTPGPPGAPGTPGRPGLDGPPGPPGFPGQKGDRGFGVPGPPGPPGPPGTKGVQGPKGDPG
FPGNPGLPGRAGFDGTPGPKGDPGPSGPPGLPGPPGIPGIGGQGPPGSPGPPGPVGPPGL
QGIPGEKGDPGPPGFDVPGPPGDRGTPGYPGPPGLPGPQGSPGPPGRDGMPGFPGAKGEM
GVMGAPGPPGPPGTPGRNGLPGLKGNSGLPGPPGPPGPVGQKGIKGEAGLPGPPGKVDPK
QLGAKGEKGEPGVPGIPGLSGQKGYQGLPGDPGPPGLSGPPGVPGLPGIKGDTGLPGQPG
PTGPPGVKGAMGEMGLPGPPGIKGSQGIAGRPGQPGPAGFPGLKGEKGDPGLSSIGIPGL
PGPKGDLGLPGYPGSPGSKGVAGNPGLPGFPGSPGAKGEPGLPGFPGTPGIPGPKGIEGP
PGNPGLPGPPGPVGDIGRPGPPGPSGEKGQPGRDGIPGPAGQKGEPGLPGFGRPGPPGLP
GLSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGLPGPPLEGPKGSPGPPG
VPGRPGPPGPEGPRGPPGSGGLKGEKGNPGQPGPPGLPGQKGDHGPPGRQGDPGRPGLNG
MKGDPGVPGVPGFPGMKGPTGPAGPAGLTGSQGLPGPPGPPGLPGTIGRSIVVKGDPGPP
GPPGQPGSKGPPGLPGPQGLPGPIGHPGDPGRDGLPGFDGPAGRKGERGLPGQPGSRGIQ
GPPGPDGLQGPPGPPGTASVAHGFLITRHSQTRDTPLCPQGTSRIYDGFSLLYVQGNERA
HGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLTGQSIQ
PFISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMHTSAGAEGSGQALASPG
SCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVSEMFSKPQSETLKAGDLRTRISRC
QVCMKKT
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggagccgcggttgtggagctgcagcctggctgccggctgcctgttgctgctggggtgc
tgggggccggaggaggcggtggcggcggcttgccatggatgtacatcttcatccaaatgt
gactgcagtggagtaaaaggtgaaaagggtgaaaggggattcccaggcttggaaggacag
ccaggtttgcctggatttccaggacctgaaggaccacctggtccaagaggctcaaagggt
gatgatggacttccaggacctattggacccaaaggaatcagaggacctccagggcttcca
ggatttccaggaacaccaggacttcctggattaccaggacaagatgggccaccaggacct
cagggtatcccaggatgcaatggaacaaagggagagcgtggattcccaggcagtccaggt
tttcctggtttacaagggcctcctggaccccctggtctgccaggtatgaagggtgaacca
ggtgaaataattacatccttgctgccaggacagaagggcgacccaggatttccaggtctt
ccaggcatacctggcccacccggctccatgggagtaccaggtccaattggccctccaggg
ccaccaggtttgacaggacctcctggtccaccagggctgccaggacctaagggtaatatg
ggtttgaatttccaaggacccaaaggtgaaaaaggtgaacaaggtcttcagggacctcca
gggccaccaggacaaattggagaacagaagagaccaaatgacattgagtttcagaaagga
gatcagggtattccaggtgatccaggcccaccaggacttcctgggccacaaggccctcct
ggtcttcccggtggcgtaaaaggtgaaaaaggtgagcaaggagaaccaggcaaaagagga
aaacctggcaaagatggagaacctggtcagcctggtagggatggtttacccggtgggcct
ggaatcaatggtgctccaggaagagagggcgaaaagggtgaaaaaggtgacactggtccc
cctggtcctcctggaattgtcatttcaagaccaggcattgatgcaacagtgggaccaaaa
ggtagcaaaggattgccaggacttccaggagccaagggggagcgtggattctctggtagg
ccaggcccacctggcttaccaggttctccagggatcactactgttggacctcctggccca
cctggcttacctggtgaaagaggacagaagggagatccaggtttacctggtgtttctatt
cctgggcaaccaggacttgatggaccacgaggacctcctggaccaccaggtcccccaggg
ccagctgcaccatctgttcctcctggtgaagggttatgtgagcgtgggccaccaggtcct
ccaggaattccaggacaacaaggctttacaggggagcgaggccaaaaaggtgatcaagga
gacacatgcttcaattgcataggaactggaataactgggcctcctggggagagaggacta
ccaggacctccaggtagtccaggttctcctggttttcctggaccaaaaggtgaaaagggg
cttcctggattaactggccttgtagggccaccaggattcccagggtccccaggtcctcct
gggagacctggtcctaaaggagacccaggggatgtcctgacttctccaagaatgaaaggt
gacaaaggagaccctggcttcccaggacctccaggtcttcctggcctagatggcactcct
ggacgagatggactgccaggtctacctggtcctaagggggaacccggcagtgttgcattc
aaaggagaaataggtattccaggtgatccaggaataccaggtcctcctggagacaaagga
cttcctggacctcctgggtttggtccacaaggttcccctggtgaaaagggtatccaaggt
gtatcaggccgcccagggcctcctggagttcctggtccaaaaggtgaccctggccagact
attacagaaccaggagttcctggcccccctggtcctccgggaagaaatggtgacccaggt
cttccaggagatcctggtcagccgggtcagcgtggcttaccaggcatcccaggagcaaag
ggagagccaggtattcctggcattggacttccaggtccaccaggcccaaaaggtttccca
gggactccaggccctcccggagctccgggaactccaggtcgccctggtctagatgggcct
cctggaccacctggtttcccaggacagaagggagatcgtggatttggagttccaggaccg
cctggacccccaggaccaccaggcacaaaaggagttcaaggacccaaaggtgatcctggc
ttcccaggaaaccctggtctcccaggacgggcaggttttgatggaacgccagggcctaaa
ggtgaccctggaccaagcggaccaccaggactcccaggcccaccaggcatccctggcatt
ggtggtcaaggtccacctggatctccaggacctccgggtcctgttggccccccagggttg
cagggcattccaggggagaaaggggatccgggtcctccaggcttcgatgttcctggtcct
ccaggcgaccgaggaaccccaggatatccaggaccccctggtctcccagggcctcagggt
tcacccggaccacctggccgggatggaatgcctggatttccaggtgccaaaggtgagatg
ggcgtcatgggagctcccggtcctccagggcctccaggaactcctggaagaaacggcctg
cctggcttgaaaggtaacagtggattacccggtccgccagggcctcctggaccagtagga
cagaaaggtatcaaaggtgaagcaggcctgccaggtccacctggaaaagttgatccaaaa
cagctaggagcaaaaggagaaaaaggcgagccaggtgttccaggtattcctggtttatca
ggacagaaaggttatcaaggtctcccaggtgacccaggcccaccaggacttagtggccca
ccaggtgtgccaggattgccaggcatcaagggagacacagggcttcctggacagccagga
ccaacaggacctccaggggtgaaaggtgccatgggagagatgggccttccaggtcccccg
gggattaaaggcagccaaggaatagcaggacgtccagggcagcctgggcctgcaggattt
cctggattgaaaggggagaaaggtgaccctggtctttcaagcattggtattcctggtctc
cctggaccaaagggtgatcttggtttgcctgggtacccaggtagtccaggcagtaaaggt
gtcgctggaaatcctggtttgcctggatttccaggcagtccgggtgcaaaaggagaacca
ggccttcctggattcccaggaacgccaggaattccaggaccaaaaggtatcgagggacct
ccaggtaatcctggcctgcctggaccacctgggccagtaggtgatattggccgtcctggc
cctcctggtccttcaggggagaagggacagcctggtcgagatggtatccctggaccagct
ggtcagaagggtgaaccaggtctaccaggttttgggcgcccaggacccccaggactccca
ggattgtcagggcaaaaaggagaactggggttacctggcccaccggggccccctggactt
ccaggtctgaagggagaaccaggttttcagggattccctggtctacagggtccaccaggt
ccaccaggattaccagggccacctctagaaggtcctaaaggtagccctggcccaccaggt
gttccaggaaggccaggtccaccaggcccagaaggtccacgagggccaccaggcagtgga
ggacttaaaggggaaaaagggaacccaggtcaacctggcccacctggcctgcctggtcaa
aagggagatcatggaccacctggacgccagggggatcctggtcgtccaggcctgaatgga
atgaagggcgaccccggggttccaggagttccaggattcccaggtatgaagggtcccact
ggacctgcaggacccgctggcctcacaggcagtcaaggactgccaggcccaccaggtcca
ccaggtttaccaggtaccattggacgaagcattgttgtcaaaggtgaccctggtcccccg
ggtcctccaggacagcctgggtcgaaagggccacctggattgccagggccacagggattg
ccaggtccaattggtcatcctggtgacccagggcgagatggactacctggttttgatggt
ccagcaggacgtaaaggagaaagaggtcttccaggccagccaggttcacgaggaatacag
ggacctcctggtcctgatggcttacaaggcccacctggtcctcctggaacagcttctgtt
gctcacggattccttataactcggcacagccagaccagggatacaccactatgtccacaa
ggaacgtcaagaatatatgatggattctctcttctatatgtgcaaggaaatgagagagca
catggccaggatttgggtactgctgggagctgtcttagacgtttcagcaccatgcccttc
atgttctgcaacatcaacaatgtttgtaattttgcatcaaggaatgactattcctattgg
ctgtcaactccagagccaatgccgatgagcatggagccactgactgggcaaagcatccag
ccattcattagccgctgtgttgtgtgcgaagctcctgctatggtgatagctgtccacagt
cagaccattcagattccttcgtgtcctccaggctgggactccctttggattggttattct
ttcatgatgcacactagtgcaggagcagagggctctggacaggccttggcatcgcctgga
tcctgtttagaagaattccgctcagctccgtttattgaatgccatggtcgtggcacttgt
aattactatgccaattcatacagtttctggctggcaactgtagaggtgtcagaaatgttc
agtaaacctcagtcagagacactgaaagctggagacttgaggacgcgtattagtcgttgt
caagtttgcatgaagaagacgtaa
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