Rissa tridactyla (black-legged kittiwake): 128916168
Help
Entry
128916168 CDS
T09443
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03440
Homologous recombination
rtd03450
Non-homologous end-joining
rtd04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128916168 (RAD50)
03450 Non-homologous end-joining
128916168 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
128916168 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtd03032
]
128916168 (RAD50)
03400 DNA repair and recombination proteins [BR:
rtd03400
]
128916168 (RAD50)
DNA replication proteins [BR:
rtd03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
128916168 (RAD50)
DNA repair and recombination proteins [BR:
rtd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
128916168 (RAD50)
BRCA1-C complex
128916168 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
128916168 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
AAA_24
AAA_22
AAA_13
Motif
Other DBs
NCBI-GeneID:
128916168
NCBI-ProteinID:
XP_054073461
LinkDB
All DBs
Position
11:9151496..9179727
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIITFLNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGSSFVHDPKVANETDVRAQIRLQFRDVNGELVAVQRSMVCTQKGKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVINNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRLKQSSKVKECQAELKYLKQNKEKAQEIQDHLSNREAQLAASKDN
VKSIENQLDPLKTSLAAVEQNLMKVMRLDNDVKALESRRRQMEKDNQDLQQKMEKVFQGT
DEQLRDRYQNHQKTVKEKETRLLDCKRELDRATKECQRFNSEKSELLIERGRLQMQADRH
QEHIATRDSLIQSLAVQLELDGFERAPFNERHITNFHRLLKERQKRDIEAANHLMREFAR
KETMKQKQIDEIRDKKTGLERTIDLKSDIQNKKQVELKNVKYELQQLEGFSDRILELDQE
IVKTEHELEKAERNSNVETLELEVQTLQNEKINLDKALRKLDQEMEQLNLHTMTITQMEM
LKKDKAEKEEQIRRVKSRHSDELTSLLGYFPNKNQLEDWLHNRNRKINQTRDNLAVLNKR
LASVECDKTHFSNELRKKEEQLSLHEAKLFDVCGSQDFDSDLNKLQDEIEKSSKQRAVLA
GATAVYSQFITQLREENQSCCPVCQRDFKSEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKRRDEMMSLKPLRRTVLDLHEKDIPDLRNKIQSANRDLTGLKAEIEEQESLLQTALS
EEEGAKACLQDITLMERHQTDIRDVERKIAQQEAKLLGVDLSRTVLQVSHEKQEKKHLWD
TVTGKIELNQKLKQDQQNQIQQLKSTVNELKAEKLQIASSMQRRQQLEEQTVELTTEVQS
LCREIKEAKEQVFPLDATLEKLQEEKEDLMNKRTASNKETQEKINGIEEKVKDINKYMKE
IENYIQQGKDDYKKQKESELDEVNSQLATCEKQKEKISKEMEMIRQDIDTQKIQQRWLED
NLTLRKRNEELKEVEDNIKHLVKEMGEMKVPQLKNEQKHLEEKIDSLKRNHHVALGRQRG
FEEEIVRFKKELREPQFKDAEEKYREMMIIMRTTELANKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagattgagaaaatgagtatcctcggagtgaggagttttggggtagaggataaa
gataaacaaattatcacttttcttaatccattaactattttggtgggaccaaatggtgca
ggaaaaacgactatcattgaatgtcttaaatatatatccactggagattttcctcctggc
accaaaggaagctcatttgttcatgatccaaaggttgccaatgaaacagatgttagagct
cagattcgattacagtttcgagatgtaaatggagagctcgtagctgttcagcggtccatg
gtctgtacccagaaaggcaagaaaacagaatttaaaacacttgaaggtgtcattactaga
acaaagcatggcgagaaggtcagcctgagttccaagtgtgcagaaattgatcgagagatg
atcagcgcccttggtgtttccaaatcagtgattaacaatgtcattttctgccaccaagaa
gaatcaaactggccattaagcgaagggaaagccctgaagcaaaaatttgatgagatcttt
tcagcaacaaggtatattaaagcactcgaaactctccgtcaggtacgactgaaacaaagc
tcgaaagtaaaagagtgtcaggcagaactgaaatatctaaaacagaataaagaaaaagca
caggaaatccaagatcatcttagcaatagagaggctcaactggctgcttctaaggacaat
gtaaaatcaattgagaatcaacttgatcctctaaagacttctctggcagcggttgaacag
aatctcatgaaagtaatgaggctcgacaatgatgtaaaagccctggagagccggaggagg
cagatggagaaagataatcaagatttgcaacagaagatggaaaaggtttttcaaggaaca
gatgaacaactaagggatagataccagaaccaccagaaaacagtgaaggagaaggagacg
agattgttggactgtaagcgtgaattagatagagccactaaagaatgccagagatttaac
agtgagaaatcagaactacttattgaacgaggtcgtcttcaaatgcaagcagatcgtcac
caagaacacatcgcaacgagggattcattaattcagtctttggcagtacagctggaatta
gatggctttgagcgagcaccttttaatgaaaggcacattaccaattttcacaggttgttg
aaggaaagacagaaaagagatatagaagccgcaaatcatttaatgagggaatttgcacga
aaagaaacaatgaaacaaaaacagatagatgaaataagagacaagaaaactggattagaa
agaaccattgacctgaaatcagacattcaaaataagaaacaagttgagttgaagaatgta
aaatacgaattgcagcagttggaggggttttcagacagaattctggagttggatcaggag
attgtcaagacagaacatgagctggagaaggctgagaggaacagcaatgtagaaacactc
gaactggaagtacaaactctgcaaaatgagaaaataaacctggacaaagctcttcggaag
ctggatcaagagatggaacagttgaatctgcataccatgacaattacccaaatggagatg
ttgaaaaaagacaaagcagagaaagaagagcagatcagaagagtaaaatcaagacattct
gatgagctgacatcactgttgggatactttccgaataaaaaccaacttgaagattggctt
cataatagaaatagaaagattaatcagacaagggataatcttgctgtccttaacaaacga
ctggcatccgtagaatgtgataaaactcatttcagtaatgagctaagaaaaaaagaagaa
caattgtcacttcatgaagcaaagctctttgatgtttgtggaagccaagattttgacagt
gatctgaacaagcttcaagatgaaattgaaaaaagttcaaaacagcgagctgtgcttgct
ggagccactgcagtttattcacagttcattacacaactgagagaggagaaccagtcgtgt
tgtccagtttgtcaaagagattttaaatcagaggccgagctgcaagatgtaattagtgac
ctgcagtctaaactgcgtcttgctccagacaaactgaagtctacagagtctgagcttaaa
agaaaagagaaaagacgtgatgaaatgatgagccttaaaccccttaggcgaactgtactt
gacctccatgaaaaggacataccagacttgaggaacaagatacagagtgcaaacagggat
ttaacaggcctgaaggctgagatagaagaacaggaatcactcttgcagacagctttgtct
gaagaggaaggtgccaaggcatgtttacaggatataacactaatggaaaggcaccagact
gatattagggatgttgaacgaaaaattgctcagcaggaggctaagctgctaggggttgac
ttaagtagaactgttctacaagtaagccatgaaaaacaagagaaaaaacacttgtgggat
acagttactggtaaaattgagttaaatcaaaaactcaagcaagaccagcaaaatcagatt
cagcagctaaagagtacagttaatgagcttaaagcggagaaacttcagattgccagcagc
atgcagcgtcgacaacagctggaggaacaaacagtggaattaaccactgaggttcagtcc
ttatgcagggagatcaaggaagcaaaagaacaggtgtttcctttggatgcaactttagaa
aaactgcaggaggagaaggaggatctaatgaataaaaggactgcaagtaataaggaaaca
caagagaagataaatggcatagaagagaaagttaaggatataaacaagtacatgaaagaa
attgaaaactatattcaacaaggaaaagacgactataaaaagcaaaaggagtctgaactt
gatgaagtaaattctcagctagctacctgtgagaaacagaaggaaaagataagtaaagag
atggaaatgattcgacaagatattgacactcaaaagatacagcagaggtggctagaggat
aatcttactttgaggaagcggaatgaagagctaaaagaggttgaagacaatataaaacac
ctggtgaaggagatgggagaaatgaaagtcccacaattgaaaaatgaacagaagcattta
gaggagaagatagactctctgaaaagaaaccatcatgttgcacttggccgacaacgtgga
tttgaggaagagattgttcggtttaaaaaggaacttcgagagccacaattcaaagatgca
gaggaaaaatatagggagatgatgattattatgagaacaacagaactagcaaacaaagat
ctggatctttattacaaggctcttgataaagcaataatgacatttcatagcatgaagatg
gaagaaatcaacaaaataattcgtgacctttggcgaagcacctacagaggacaagatatt
gaatatatagaaattcgttctgatgcagatgagaatgtctcagcctctgataaaagaaga
agttacaattatagagtggtaatgataaagggagatacagcactggatatgcgaggaagg
tgtagtgctggacaaaaggtgcttgcttctctcattattcgtcttgctctagcagaaacg
ttctgtctcaactgtggtatattggcactagatgagcctactaccaatcttgatcgagaa
aacatagagtcccttgcacatgccctggtggagataataaaaagccgctcacaacagcgt
aactttcagcttctggtgataactcatgatgaagattttgttgaacttctgggccgttct
gaatatgtggaaacattctacaggataaagaagaacattgaccagtgctctgagatcatg
aaatgcagtgtcagctccctgggctcatatgttcattag
DBGET
integrated database retrieval system
