Rissa tridactyla (black-legged kittiwake): 128916202
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Entry
128916202 CDS
T09443
Symbol
PCDH12
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtd04515
]
128916202 (PCDH12)
Cell adhesion molecules [BR:
rtd04515
]
Cadherins
Protocadherins
128916202 (PCDH12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
TMEM51
Motif
Other DBs
NCBI-GeneID:
128916202
NCBI-ProteinID:
XP_054073524
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All DBs
Position
11:19761372..19771715
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AA seq
1172 aa
AA seq
DB search
MPRTCNRRKDHWGMRRRAGKPVVACRGSGAVGFASSMLLLSRSALHLPTLWWYLFLSADA
QEVATFTVQYRVFEEVPPGTVIGTLAEHVEGGESGEAADAFQLMETPGRFPLHVGSGDGV
LSTAGRVDREQLCRHSDPCWVSFDVLAARNLALIHVEVQVLDINDNAPRFPTPELELEMS
ESASLRTRIPLDRALDADAGPNARCSYALSPSEHFALEVVSSSDGTRHAELVVVKEVDRE
LHSSFDLVLTATDHGEPPKSGTALIKVIVLDSNDNSPVFAESSLTVEVWEDALPGTLLVT
VTATDPDQGPNGEIEYSLSKHAPPEVLSTFGIDARTGSIILKHPLDYEETHSYELDVQAR
DLGANPIPAHCKILVKVLDVNDNAPDVHVTWAARVPVLSEALPKDSFVALVTASDPDSGS
NGQVHCSLSQGYEHFRLKRTNSHSYVLMTNATLDRELRAEYNLTLVVRDQGDLSLAVLKH
LTICISDVNDNAPSFEKATYEVAVAENSKAPAFLLTVRATDPDLGFNGKITYSISDSSAS
GLVSIDPTTGDVFALQAFDYEQVKSLEFLVTAEDGGHPKLASNASIRLAVLDQNDNAPAI
TTPVLVGGAATLSILVNVETGCFWVVPGNGSTQGTAAVTNATLVSCASTPFLFTIAARDV
DSGINGALRYDLVGGDDVGLFILDPLLGQVFLNASNASSLAGSERELVVRVSDEGDIPLH
TLARVRLVFRHHGAFSKISAQDPGWLSPAVVVVICLAALLGGCLLLLALTLSLRKKEKKD
SMAYNCREAEDARRQQQLKKPHRQIQKTDIHLVPLLRGRPREAEPPRPCQEDLPSTATPA
AGGCPQAPLHLTPTLYRTLRNQRTQKDSDEQQGTFTLPILQRQPHRPKNPAKEAVSPLDA
PPHCKSLVKPPEGPMGEPPLPPNQPVGAGGPGQPQPHQHILRSLVRLSLVALAEQSPTGE
FAMESPPVQQISQLLSLLHQGQFQPKTNHRGNKYTAKNGSRAAGLDADCLSTKDSGHGES
EAEDRDSESGFELSVPQLVGEELETLLEPQAELALKRLTAADPAWVARLSLPLTSSYKDN
VFSPDSPHSPQDEEAARQEKPRTFETFGKGAGSDSNAAGTRLASTFLSEMSTLFEMILSQ
KVQVHNETGSGLLRQLSARGKSLGLEDGAPVL
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggacttgcaatcgccgtaaggaccattgggggatgcggcggcgggcgggcaag
cccgtggtggcgtgccggggcagtggggcggtgggcttcgccagcagcatgctgctgctg
agccgctccgctctccatctccccaccttgtggtggtacctcttcctctctgccgatgcc
caggaggtggccacgttcacggtgcagtaccgggtgttcgaagaagtgccgccgggaacg
gtgatagggacgctggccgagcacgtcgagggtggcgagagcggcgaagcagcggatgcc
ttccagctgatggagacccccgggaggttcccactgcatgtggggagcggggacggggtg
ctcagcacggccgggcgggtggacagggagcagctgtgccggcacagcgatccctgctgg
gtctcgtttgacgtgttggctgcccgaaacctggctcttattcatgtggaagttcaagtg
ctggacatcaatgacaacgcgccgcggttccccacgcccgagctggagctagagatgtcg
gagagcgcatccctgcggacgcggatcccgctggaccgagccctggacgccgatgccggc
cccaacgcccgctgctcctacgccctctcccccagcgagcactttgccctggaggtcgtc
tccagctctgatgggacgaggcacgcagagctcgttgtggttaaagaagtggaccgtgag
ctgcactcctccttcgaccttgtgctgacagccactgaccatggggagccaccaaaatca
ggtaccgctttaattaaagtcatcgtccttgactccaatgataacagccccgtctttgca
gagagctctttgacggttgaggtttgggaggatgctctgcccgggaccctccttgtgaca
gtcacggccactgaccccgaccagggtcccaatggggagatcgagtacagcctgagcaag
cacgcgcccccagaggtgctgagcacttttggcatcgatgcccgcacgggcagcatcatc
ctgaagcacccactggactatgaggaaacccactcctacgagctggatgtgcaagcccgg
gacctgggcgccaaccccatcccagcacactgcaagatcctggtcaaagtcctggatgtc
aacgacaacgctcccgatgtccatgtcacctgggccgcacgggtgcccgtcctctccgaa
gccctccccaaagacagtttcgtggctctggtgacggccagtgaccctgattcggggagc
aacgggcaagtgcattgctccctcagtcaagggtatgagcacttcaggctgaagaggacc
aacagccacagctacgtgctgatgaccaacgccacgctggacagggagctgcgtgccgag
tacaacctgacgttggtggtgcgggaccagggtgacctttccttggcggtgctgaagcat
ctcactatctgcatcagcgacgtcaatgacaatgccccctccttcgagaaggccacctat
gaggttgctgttgctgagaacagcaaagcacctgccttcttgctcaccgtccgtgccacc
gaccctgacctgggcttcaatgggaaaatcacctacagcatctcggactcctctgcttca
ggtctggtctcaatcgaccccaccactggggatgtttttgccctccaagcttttgattat
gagcaggtgaagagtctggagttcctggtgaccgcggaggatggtggtcaccccaagctg
gcgtccaacgcctccatcaggctggctgtgctggaccagaatgacaacgcacccgccatc
accacgccagtgctggtgggaggcgcagccacactctccatcctggtcaatgtggagaca
gggtgcttctgggtggtgcctgggaatgggagcacccaagggactgcagcggtgaccaat
gcaacactcgtgtcatgtgccagcactcccttcctcttcaccatcgcggccagggatgtg
gactctggcatcaacggggctctccggtatgatctggtgggtggggatgatgttgggctc
ttcatcctggaccctctcttggggcaggtcttcctcaacgccagcaacgccagcagcctc
gccggcagcgagcgggagctggtggtgcgggtgagcgatgagggggacatccccctgcac
accctggcccgggtccgcttagttttccggcatcacggggcgttctccaaaatctcagcc
caggatcctgggtggctgagcccggccgtggtggtcgttatctgcctggccgctctcctg
ggcgggtgccttctccttttggctttaaccctgtctttgcgtaagaaagagaagaaggac
agcatggcctacaactgcagggaggcagaggatgcccgcaggcagcagcagctcaagaag
ccccacaggcagatccagaagacggacatccaccttgtcccgctgctccggggccgtccc
cgggaggctgagcccccccgtccctgccaggaggatctgcccagcacagctacccccgcg
gcgggtggctgcccacaggctccccttcacctcacccccactctctacaggaccctgaga
aatcagaggacccaaaaggactcagacgagcagcaggggaccttcaccctgcccatcctg
cagcgccagccccacagaccaaaaaatccggcgaaagaggctgtgagccccctggatgca
ccaccgcactgcaagagcttggtgaagccaccagaggggcccatgggagagcccccattg
ccacccaaccagcccgtgggtgctgggggacctgggcagccccagccccaccagcacatc
ctcaggagcctggtccggctgtcgctggtggcactggcggagcagagccccacgggggag
ttcgcgatggagtcacccccggtgcagcaaatctcccagctgctctccctgctgcaccag
ggccagttccagcccaaaacaaaccacaggggaaacaagtacacggccaagaatggcagc
agggctgcggggctggacgctgactgcctgagcacgaaggacagcgggcatggcgagagt
gaggcggaggaccgcgattcggagagcgggtttgagctctccgtgccgcagctggtggga
gaggagctggagaccctcctggagccgcaggcagagctggccctcaagaggctgacggct
gctgacccggcctgggtggctcggctctccttgccgctcaccagtagttacaaggacaac
gtcttctcccccgactctccgcattcacctcaggatgaggaagctgcgaggcaggagaaa
ccaaggacctttgaaacctttggcaaaggtgctgggtctgactcgaacgccgctgggacg
agactggccagcactttcctttcagaaatgagcaccctctttgaaatgattttgtcccag
aaggtccaagtccacaacgaaacaggctcggggcttctgcggcagctgtcggcgcgtggg
aagagccttggactggaagacggtgctcctgttctgtag
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