Rissa tridactyla (black-legged kittiwake): 128916355
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Entry
128916355 CDS
T09443
Name
(RefSeq) protocadherin beta-15-like isoform X1
KO
K16494
protocadherin beta
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtd04515
]
128916355
Cell adhesion molecules [BR:
rtd04515
]
Cadherins
Protocadherins
128916355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
128916355
NCBI-ProteinID:
XP_054073832
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Position
11:complement(20762701..20767706)
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AA seq
788 aa
AA seq
DB search
MAIARQVLCLCAFLSLPLARSEPIRYSVAEEAASGSVVANVAEDAGLSPAQLAARGARLA
SEDGRQHFRLDPATGRLVVAERLDREELCGQSATCTLPFELLLANPLQFFRVEVAVEDIN
DHSPVFPEEVVIFKIPETSNPGSRFPLEGARDLDVGSNSIQAYSISPENEYFSVSFGTRR
NGDEYVELVLEKALDREEEGDVDLSLIAVDGGSPPGSGTTQIHIVILDVNDNAPVFTEEG
YIAQVLENAPVGSVVLRVMAIDRDEGVNGDITYQFRQAVGQSNSAFTIDPTSGEIKLTMP
LDFELAENHELSLRAMDGGGLSAICKVLVEVVDVNDNAPELVVNSFNSPLPENAFPGTVV
ALFTVRDRDSGANGKISCALEDQLLFSLRLAYKNYYELVTVNALDREEMARHILIVTAAD
AGSPPLTTTQTFTVDISDVNDNAPAFDQTSYTMYVHENNVPMVLVGAVSAADADVGPNAK
VTYFLAPSHPTEQPPCSCISVNSENGHVFVLRPLDYEQVKQIDVLVSACDAGSPPLSANV
TVHLVVVDENDNAPLVLYPSQDSGPPSSELVPVSAEAGYLITKVVAVDADSGQNSWLSYH
LLKATEPGLFVVGAQSGEVRLKRPVTERDAVKQKLVVVVRDNGKPPLSATAALNALLLND
FSDVRLPHSSLATEDESDSLTTYLIISLTFVSLLFLASMTAFITRKVCKRKELKAGHVLY
GAGNLQSSLADAATAGTLPHGYCYEISLTTGSGNSEFKFLKPILPSLPPQGPSEKLGRDS
LLGSVAIG
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgcaaggcaagtgctttgtctctgtgctttcctctccctgccgctcgctcgc
tccgagcccatccgctactccgtagccgaggaggcggcgagcggctccgtggtagccaac
gtggcggaggacgcggggctgtccccggcgcagctggcggctcgcggcgcccgcctggcc
tcggaggacggccggcagcactttcgcttagaccccgccaccggccggctcgtcgtggcc
gagaggctggaccgggaggagctgtgcggccagtccgctacgtgcacgctccccttcgag
ctcctgctggcaaacccgctgcagttctttcgggtggaggtggccgtggaggacatcaat
gaccattcccccgttttcccggaggaagtagtcatttttaagatcccggaaacgagcaac
cctggctcgcgtttccctctggagggtgctcgggacctggatgttggcagcaacagcatc
caggcttacagcatttctcccgagaatgagtactttagtgtctcctttggtactcggagg
aacggtgacgaatatgttgaactggtcttggagaaggctctagacagagaggaggaagga
gacgtggatttaagtctcattgccgtggatgggggctctcctcccgggagtgggaccaca
caaatccacattgttattctagatgtaaatgacaatgctcctgtcttcacagaggaagga
tatattgcgcaggttttggaaaatgcgcctgttggctcagtggtccttagagtgatggct
attgatcgggatgagggagttaatggggacatcacctatcagttcaggcaagcagtggga
cagagcaactcagcattcacgatcgaccctactagtggtgaaattaaactcacgatgcct
ctggactttgagttggcagagaatcatgagctcagtttgcgggccatggatggcggtggc
ctgtcagcaatctgcaaggtgttggtggaggtggtggacgtgaatgacaatgcacctgag
ctggtggttaactccttcaacagccccctccccgagaacgcattccctggaacagtggtt
gctctctttactgtcagggaccgggattctggtgcgaatgggaagatctcctgtgccctt
gaggatcagctattgttctccctgcgtctggcctataagaactactatgagcttgtcacc
gtcaatgctctggacagggaggagatggcacggcacatcctcattgtcacagcagcagac
gcagggtcacctcctctcacaaccacccagaccttcacggtggacatctccgatgtcaat
gacaatgcacctgccttcgaccagacatcatacacgatgtatgtgcatgagaacaatgtc
cccatggtgcttgttggagctgtcagtgctgcagatgctgatgtggggcccaatgccaag
gtgacatatttcctggcaccgtcccatcccacagagcagcctccctgctcctgcatctcc
gtgaactctgagaatgggcacgtgtttgtgctgcggcctctggactatgagcaggtgaag
cagattgatgtcttggtgagtgcctgtgatgcgggatctcctcctctcagtgccaacgtc
actgtccaccttgttgtggtggatgagaatgacaatgcgcctctggtgctgtacccatca
caggacagcggtccaccatccagcgagctggtgcctgtatcagctgaggcagggtacctc
atcaccaaagtggtggctgtggatgcagactcgggacagaactcgtggctctcataccac
ttgctgaaggccaccgagcccgggctgtttgtggtgggtgcccaaagcggggaggtgcgg
ctgaagaggccagtgacagagagggatgctgtgaagcagaagctagttgttgtggtgcga
gacaatgggaagccaccattgtcagccactgctgcactgaacgcactcctgctcaatgac
ttctcagacgtgcgtctaccgcacagcagcctggccacggaggacgagagtgactccctg
acaacctatttaatcatttccttgacctttgtctcactcctcttcctcgcatccatgaca
gccttcatcactcgcaaggtgtgcaagagaaaggagctgaaggcagggcacgtgctttat
ggtgctggcaacttgcagagcagcctggctgatgcagccacagcagggaccttgccccat
ggctattgttatgagatcagcctcacaacgggctctggcaacagcgagttcaagttcctg
aagcccatcctccccagcctgccaccacaggggccttcagaaaagctggggagggattct
ttattggggagcgtagcgataggatga
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