Rissa tridactyla (black-legged kittiwake): 128916488
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Entry
128916488 CDS
T09443
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128916488 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtd03041
]
128916488 (PRPF6)
Spliceosome [BR:
rtd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128916488 (PRPF6)
Complex C
U5 SnRNP specific factors
128916488 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_CcmH_CycH
TPR_1
T7SS_EccA1_N
ARM_TT21_C
ARM_TT21_5th
TPR_21
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
128916488
NCBI-ProteinID:
XP_054074257
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All DBs
Position
12:complement(4403414..4430378)
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggagccacaggtttcaccacccgctcggatattggccctgcgcgtgatgcc
aatgaccccgtggatgatcgtcatgctccgccagggaagagaactgttggggatcaaatg
aaaaagaatcagacggctgatgatgatgacgaagatttgaacgacaccaattatgatgag
ttcaatgggtatgctgggagcctcttctcaagtggtccctatgaaaaagacgatgaggaa
gcagatgccatttatgcagctttggataagaggatggatgaacgcagaaaagaaagaagg
gaacaacgagaaaaagaggaaatagaaaaataccgtatggagcgacccaaaattcagcag
cagttctcggatttgaaacggaagctagcagaggtcacagaagaagagtggctgagtatt
ccagaagttggtgatgccaggaacaagcgtcagaggaatcctcgttacgagaagctgact
cctgtacccgacagcttctttgcaaagcatttacagtcaggggagaatcacacttctgtg
gacccacgccaaacgcaatttggtgggttgaatactccgtatccagggggcttgaatact
ccatacccaggaggaatgacaccaggcttaatgacacctgggacaggcgaattggatatg
aggaagatcggccaagccaggaacaccttgatggatatgaggctaagccaggtgtcggac
tccgtgagtggccagactgtagtggacccgaaaggatatctgacagacttgaattcgatg
attcccacgcatggaggagatatcaatgatatcaagaaagcccgtttgctcctgaaatct
gtacgagagaccaatcctcatcatccgccagcctggatagcatcagcccgactggaggag
gtcactggcaaactccaagtggctcgaaacctcatcatgaaaggaacggagatgtgcccc
aagagtgaagatgtttggttagaagctgctcggcttcagcctggggatacagccaaagct
gtggtggcccaagctgtccgccaccttccgcagtctgtccgaatttatataagagcagca
gagctggagacagacatccgtgcaaagaaacgcgtccttaggaaagcccttgagcatgtt
cccaattcagtgcgtttgtggaaagcagccgtggagttagaagaacctgaggatgccagg
atcatgctgagtcgggctgtggagtgctgtccgactagcgttgaactgtggcttgcgctg
gcaaggctggagacatatgagaatgctcgtaaagtccttaacaaagcccgtgagaatatt
ccgacggatcgtcacatctggattactgctgccaaactggaggaagccaatggaaacacc
cagatggtggagaaaatcattgacagagccatcacatctcttagggctaacggtgtggaa
atcaacagagagcaatggatacaggatgctgaggaatgtgataaagctggaagtgtggcc
acatgccaggcaatcatgcgagctgtgattgggattgggattgaggaagaagatcggaaa
catacctggatggaagatgcagacagttgtgttgctcataatgctctggagtgtgctcga
gcaatttatgcttatgccttgcaagttttcccgagcaagaagagtgtgtggctgcgagca
gcgtactttgaaaagaaccacggaacgagagaatccttggaggctcttttgcagagagct
gttgctcactgtcccaaagcagaagtgctctggctcatgggagccaaatcgaagtggctg
gcaggagatgtgccagcagccagaagcattttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtgaagcttgagtcagaaaacaatgagtatgaaaga
gcaaggaggctgctggcaaaagcccgcagcagtgcccccactgcaagggtcttcatgaag
tctgtgaagttagagtgggtgcttgggaacattgctgcagcccaggagctttgtgaggaa
gccctgaagcactacgaggacttccccaaactgtggatgatgaagggacaaatcgaggaa
caaaaggagcttgtagagaaggcacgggaggcttataatcaagggttgaaaaaatgcccc
cattccatacccctgtggcttttgctgtccaggctggaggagaaagttgggcagttgact
agagcaagagccatcttggaaaagtctcgcctaaagaatccaaagaatccggatctctgg
ttagagtctgtgcgattggagtacagagctgggctaaagaatattgcaaatactctgatg
gccaaggcattgcaagaatgccccaattcaggaatcctgtggtcagaggcaattttcctt
gaagcgcgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaacatgac
ccacatgtcctgttggctgtggccaagctattctggagcgaacgtaaaataaccaaggcc
cgagaatggttccaccgaacggtgaagatagactctgaccttggggatgcctgggctttc
ttttataaatttgagctgcagcacggcacagaggaacaacaagaagaggtgaggaagcgc
tgtgagaatgctgaacctcgccacggagagctctggtgtgatgtctccaaggacatagag
aactggcagaaaaagatcggagagattctcgtgcttgtggcagccaagcttaaaaatacc
ttctag
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