Rissa tridactyla (black-legged kittiwake): 128916648
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Entry
128916648 CDS
T09443
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03250
Viral life cycle - HIV-1
rtd04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128916648 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
128916648 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtd03400
]
128916648 (SAMHD1)
DNA repair and recombination proteins [BR:
rtd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
128916648 (SAMHD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
HD_assoc_2
Pdc1_Ge1
PDEase_I
Motif
Other DBs
NCBI-GeneID:
128916648
NCBI-ProteinID:
XP_054074571
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Position
12:complement(16949404..16976808)
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AA seq
616 aa
AA seq
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MGSPAAGWDAAPTKRARREGSPEEPRGPAAESGRCDPRLWGTERLCQYLSCCGVGDPGLL
RRFRESGVTGSMLLDLPACAFEVTGVCLPAERLQVLACLNKLRQQHVDVMKVFNDPIHGH
IEIHPLLVRIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSIGVGYLAGCLVRALKER
QPELDITQRDILCVEIAGLCHDLGHGPFSHMFDGRFIPLTRPDWKWKHETASVKMFEHLI
ASNKLEEVMKSYGLVLEEDMNFIKEQIGGPIDETACEKSWPYRGRQKEKSFLYEIVANKK
NGIDVDKWDYFARDCHHLGIQNNFDYKRLLKFTRVCEVKNQKHICTRDKEVGNLYDMFHT
RNCLHRRAYQHKIGNIIEIMITEAFQKADKFLKIEGSGGKQYQISTAMEDMEAYTKLTDN
IYLEILHSSCPELKEAREILRKIERRELYKFLGETQPEKVGEVVKNNSLAESIANSKPEK
DPPDVELKAEDFIIDIINMDYGMKEQNPIDNVLFYCKADPSKAVKISKEQVSKLLPMRFA
EQVIRVYCKSQDPDVVSAAKQYFIQWCIEKDFTKPQDSDVVAPHLTPMKESWNNRRDDEH
RTAAESNCKQRLPFDK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggggagcccggcggcgggatgggacgcggctcccaccaagcgggcgcggcgtgagggc
tcccctgaggagccgcggggcccggcggcggagagcggccgctgcgacccccggctgtgg
ggcacggagcggctctgccagtacctctcgtgctgcggcgtgggcgatcctggcctgctg
cgccgcttccgagagagcggagtcaccgggagcatgctgctggacctgccggcctgcgcc
ttcgaggtcaccggtgtctgcctcccggccgagagactacaagtgctggcctgcctgaac
aaactgcgacagcagcacgtggatgtgatgaaggtttttaacgatccaattcatgggcac
attgaaatacatccccttcttgttcgcatcatcgacacgcctcagtttcagcgtctccga
tacatcaagcagctgggtggcacttactttgtttttcccggagcctctcacaaccgcttt
gaacactctataggggtgggctacctagcaggatgtctggttcgtgcactgaaggagaga
caacccgaactggacataacccagcgagatatcctttgtgtagaaattgctgggctttgt
catgatttgggtcatgggccattttcacacatgtttgatggaagatttattccactcact
cgtccagattggaaatggaagcatgaaactgcttctgttaaaatgtttgagcacctgatc
gcttccaataaactagaagaagtcatgaagtcatacggtcttgtcctggaagaagacatg
aacttcatcaaggaacaaataggagggcctatagatgaaaccgcttgtgagaaatcgtgg
ccctaccgtggtcgacaaaaggagaaaagtttcctgtatgagatagtagctaacaaaaaa
aatggcattgacgttgacaaatgggattattttgcaagggattgccatcacctaggaatc
cagaataattttgattataagcgattacttaaattcactcgggtctgtgaagtaaaaaat
cagaagcatatctgtacgcgtgacaaggaagttggaaatttgtatgatatgttccacacg
cggaattgcctgcatcgccgagcataccagcataagattggcaacatcattgaaataatg
attacagaagcatttcaaaaagcagacaaatttttaaaaatagaaggttctggaggaaaa
cagtaccagatttctacagcaatggaggacatggaagcctacactaagctaactgataat
atctacttggaaattctgcactcgagttgtccagagctgaaggaggcacgagaaattttg
cgtaaaatagaacggcgtgaattatacaagtttttaggagagactcaacctgaaaaagtg
ggggaagttgtaaagaataatagcctggcagaaagcattgctaattccaagccagaaaag
gatcctccagatgtggagctaaaggctgaagatttcataattgatattatcaatatggat
tatggaatgaaagaacagaatcccattgataacgttctcttctattgcaaggctgatcct
tccaaggcagtcaagatcagtaaagaacaggtttcaaagctattacccatgaggtttgca
gagcaggttatccgggtttattgcaaaagtcaggatccagatgttgtttcagctgcaaaa
cagtattttattcagtggtgtatagagaaggatttcaccaaaccacaggatagtgatgtg
gttgcccctcatctaactccaatgaaggaaagctggaataacaggagagatgatgaacac
aggacagctgccgaatccaactgcaaacaaagacttccttttgataagtaa
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