Rissa tridactyla (black-legged kittiwake): 128916800
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Entry
128916800 CDS
T09443
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
128916800
NCBI-ProteinID:
XP_054074829
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All DBs
Position
12:3654987..3708300
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AA seq
1466 aa
AA seq
DB search
MLIHTCFFFACLPVASHVWGRVGQGSGRLKLTVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEELKNASQTR
NNRRNSGVASGKNLTSSGTSAEATPPPLNAVLTQPGKDRAEKKRQKGTQPKGSGESTRNQ
PSAEASVTQATPTTTRSSQRTPANPERESLGKEKPTKDSSRRGSQFQCDASAMTDIVLLV
DGSWSIGRNNFKLIKEFLSNLISPFSIAQDKIRVGLSQYSSDPRTEWDLSAYSTRDQVLE
AMRSLRYKGGNTFTGLALTHVLEQNLKPEAGARLEAEKLVILLTDGKSQDDANLAAQTLK
NLGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSSLVGRLTRVLCTRIKEKSN
KENAGSTVKDIPVNTGPQLSPTDLKISAVTSKSMHLTWSPPLRPPKKYRIVYNPSKGGIP
KEVVLDGAVSSLQLSNLTSHTEYLVSVFPIYDTVVGDGLRGVTSTLPLSSPRSLRVSELS
HNSMRLSWKAAQGATQYLVLCSAAPDGAEDYTTEVKVAQPEVLLDGLSPSTEYSVAVYAI
YGEDASDPASIQETTLALSPPRYLSFSELSHASVRVSWEAASPAVKAHRVAYVSSRGSNP
GEVEVPGTATSTVLRPLSSLTQYFISVRSTYDEGDSFPITGNVTTLKVPPPRALKVTELS
GNSLRLQWEAVAASDVVVYQIKWSTVGGEKPQELSIAGNVATAVLPGLQKNTDYKISIWA
YYKDGARSDTVSVQHRTNSRSPPTNLFIDSETPTSLQVHWTPPDGRIQHYKITYNPVSDA
GAQQTIMASGKSSSVTLQSLLPDRAYKVVVSAIHYTGESETTSTTGRTAPVLSKFPSIRG
FFPAKTEACPTISSTEGSVRGFDMMEAFGLVEKEYASIKGVAMEPFVFSGSRTFTLFRDT
QLTQRTSDVHLFAIPPEHTISILLRLLPETPKEPFAVWQITDEDFQPLLGVNLDPSKKSL
TYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVAVSHFKIALYLDCKKIAEKPINTVGS
ISTAGFIMLGKVTRTRGPRSGSASFQLQSLQIVCSSVGAEEDRCCDLPALRDEETCPTLA
PACSCTSGRPGLPGPPGPPGSPGRRGPQGEQGEPGPKGEPGPPGQVGPEGPSGQQGSPGS
QGITVQGPVGPPGIKGEKGDTGSPGMQGIPGVQGAPGRDGLQGAKGVRGLEGTAGPPGPP
GPRGFQGATGSRGSSGEKGPPGDIGPTGLPGPKGERGEKGEPQSLATIYQLVSQACERMI
QTHVLKFDSFIHEHARKPVPVWEERLKPGEPGPPGPPGPPGSNGERGENGIPGQPGKDGY
PGERGAPGPKGEKGMSGASEEGIQGPRGRTGPPGEVVLGKPGPKGYPGNAGPQGFPGVRG
QPGQSGYPGGCDISGCYGAGRRDFIP
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcacacttgcttcttttttgcctgcctgcctgtggcgagccatgtctgggga
cgcgtgggccaagggtcaggccggctgaaactcactgtgctttcagaagacaggctccaa
atgaaatggaaagagaccgaagggaacatcaatggctacaaagttcgggtaaagcccatg
gcaggggactcggagcaagaagtcatgctgaaaaccaagactcccaaagccacagtgggg
gggctgagccctaccaaggaatacacgctgcaggtctacgtgctcaacggctcccaggaa
gccctgtttgccaaaaggaaatttgtgatagaggagctaaaaaatgcatcccagactaga
aataaccgaagaaactcaggagttgcgtcaggaaagaatctcacctcttcggggacctca
gcagaggccaccccaccacccctgaatgctgtcttgacacagccaggaaaggacagagct
gaaaagaaaaggcagaaagggactcagccaaagggctcaggagaaagcacaagaaatcag
cccagtgcggaggccagtgtgacacaagcaacaccaacaaccacaagatcatcccagcgc
actcctgcaaacccggagcgagagtctctaggaaaagaaaaacccaccaaggattcatcg
aggcgaggttcccagtttcagtgcgacgcatctgcaatgactgatattgtcctgcttgtg
gatggatcttggagcatcggacgcaacaatttcaagctcattaaggagttcctgagcaat
ttgatttccccattcagtattgcccaagacaagataagagtagggctgtcccagtacagc
agcgatccccgcacagagtgggacctgagtgcttactctacgagggaccaggtgctggag
gccatgaggagtctgcggtacaagggtggcaacacctttacaggtctggcgctgactcac
gtcctggagcagaatttgaaaccagaggctggtgcccggttggaggctgagaagttggta
atcctcctgactgatggaaaatcccaggatgatgccaacctggctgctcagacgttgaaa
aacctgggcatagagatatttgccattggggtgaagaacgcggacgaggcagagctgaag
caggtggcctcggagccgctggagctcacggtgtacaacgtgttggatttccccctgctg
agctctctggttggcaggctcacccgggtcctgtgcaccaggatcaaagagaagagcaac
aaggaaaatgcaggcagcactgtgaaagatatccctgtgaacacgggtccccagctgagc
ccaactgaccttaaaatatcagcggtgacctctaagagcatgcacttgacctggagtcct
cctctgagaccaccaaagaaatatcggattgtgtataatccatctaagggcggtatcccc
aaagaggtggttttagatggagcagtctcctctttgcagctttccaatttgacctcacac
acggagtatctggtgtcggtgtttcctatttacgacacagtggttggggatgggctgaga
ggcgtcacctccacattgcctttgtcttcccctcgctccctgcgcgtctctgagctgagc
cacaacagcatgaggctgagctggaaggcggcccagggagccacgcagtacctggtgctc
tgctccgcagcccccgacggagcagaggactatacaacagaggtgaaggtggcccagcct
gaggtcctgctggacgggctgtcgcccagcacggagtactcggtcgccgtgtacgcgata
tatggagaagatgccagtgatccagccagcatccaggaaaccaccttggccttgagtcct
cctagatacctgagcttctctgagctcagccacgcgtccgtccgagtcagctgggaggct
gcgtctccggccgtgaaagctcaccgcgtcgcctatgtttctagcagagggagcaacccc
ggggaggtagaggttcctggcactgcaacatccactgtcctgagacctttatcctccctc
acccaatactttatcagtgtccgatctacatatgatgaaggggactcatttccaattacc
ggcaatgtcaccaccttaaaggtccccccgccgcgggcgctgaaggttaccgagctctcc
gggaacagcctccgactgcagtgggaagctgtggctgcctctgatgtggttgtctatcag
atcaaatggagcacagttggtggagagaagcctcaggagctctccatcgctggaaatgtg
gcaactgctgtcctgccaggcttgcagaagaacaccgactataaaatatccatctgggcc
tattacaaagatggtgctcgaagtgacacggtttctgttcagcacaggaccaattcccgg
agcccacccaccaacctcttcatcgactccgagacccccaccagcctccaggtccactgg
accccccccgatggccgcatacaacactacaaaatcacctacaaccctgtttctgatgct
ggtgctcagcaaacaatcatggcttctggcaaaagcagcagcgtgaccctgcagtcactg
ctgcctgatcgagcctacaaggtggtcgtttctgccatccactacacgggagagagcgag
accacatccacaacgggacggacggctcctgtgttgtctaaattcccttcaatacgagga
ttctttccagctaaaaccgaagcctgccccaccatcagctccaccgaaggctccgtacga
ggatttgatatgatggaagcttttggcttggtagagaaggaatatgcctccattaaaggc
gtagctatggagccatttgtattcagcggttcccgtaccttcaccctcttcagagacact
cagctcacacagaggaccagcgatgtccacctctttgccatcccgcccgagcacaccatc
agcatcctcctgcgcctcctgcccgagacccccaaggagcccttcgccgtgtggcaaatc
acagacgaggacttccagcccctccttggtgttaaccttgaccccagtaagaaatccttg
acctatttcaatcatgactacaaggctgatttacaggaagtctcctttgaccagcaggaa
gtgaagaagatattctatgggagctttcataaggtgcacgtggccgtgagccacttcaag
atcgcgctctatctggactgtaagaaaattgcagagaaacctatcaacaccgtgggcagc
atctccactgctggcttcatcatgctgggaaaagtgaccaggaccagaggacccaggagc
gggtctgcatcgttccagctgcagtctctgcagatcgtgtgcagcagcgtaggggcagag
gaagacagatgctgtgatctccctgcactgagggacgaggagacctgccctaccttagct
cctgcctgctcctgtacttctggccgcccgggcttgccaggacctccagggccccctggc
agccctgggaggagaggaccacaaggggagcagggggagccaggacccaagggtgaacca
ggcccacctggacaagtagggccagagggtcctagtggccaacaaggctctccaggttcc
caaggaatcacggttcagggtcctgtggggccaccaggaattaaaggagagaaaggagac
actgggagtcctggcatgcagggcattcctggtgtgcagggagctccaggcagggatggt
cttcaaggtgcaaagggggtgaggggactagaaggcacagctgggcctccaggacctcct
ggaccaaggggtttccaaggagcgacaggctctcgaggcagcagcggagagaagggacct
ccaggtgacattgggccaacagggctgccgggtccgaaaggagaaagaggagagaaaggg
gaaccacagtccttggccacaatttaccagctcgttagccaggcttgtgagcggatgatt
cagactcatgtgttgaaatttgactcattcattcatgaacacgcgaggaagccagttcct
gtttgggaagaaaggttaaaaccaggagaaccaggaccaccaggtcctccaggtcctcct
gggagcaatggcgaaagaggagaaaatggcatccctggacagccaggcaaagatggatat
cctggagaaagaggtgccccagggcccaaaggagaaaaagggatgtctggagccagtgaa
gaagggatccaaggacccagaggcagaacaggtccaccaggagaagttgtgctggggaag
ccaggtccaaagggttaccctgggaatgctggtcctcaaggttttcctggtgtcagagga
cagcctgggcagtctggatatccaggaggttgtgatatctctggatgttatggagctggt
agaagagatttcatcccctga
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integrated database retrieval system
