Rissa tridactyla (black-legged kittiwake): 128916832
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Entry
128916832 CDS
T09443
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04510
Focal adhesion
rtd04512
ECM-receptor interaction
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128916832 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128916832 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128916832 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rtd00535
]
128916832 (COL9A3)
Proteoglycans [BR:
rtd00535
]
Extracellular matrix (ECM) proteoglycans
Others
128916832 (COL9A3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128916832
NCBI-ProteinID:
XP_054074879
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All DBs
Position
12:3044425..3082867
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AA seq
675 aa
AA seq
DB search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NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggctggattctccgctctcgggcttgtcttcctatgtcagctattagccacgacgtca
gctcagagagtaggaccacaaggccctcctggaccacgaggaccccctggaccatctggc
aaggacggcatagatggagagccgggccctcctggcttgccaggcccaccagggccaaaa
ggtgcaccagggaagcccggagcagctggtgaagctggattgcctggcctgcctggggtg
gatggtttaacaggaactgatggcccacctggcccaaatgggcctccaggagaccgtggc
gcgctgggacctgccgggccaccgggaccagctggcaaaggactaccaggacctccgggg
cctccaggacccagtgggctcccaggtggaaatggatttcggggtcctcctggacctttt
ggtctgccaggattcccagggcctcctggaccacccggacctcccggtcttccaggcacc
tttcccgatggcagtgtggaccttcagtgcccagctctgtgcccgccgggtcctccaggt
cccccggggatgccagggttcaagggacacactggtcacaaaggagaacctggtgaaata
ggaaaagaaggagaaaagggcaaccctggccctcccggtcctccaggcatccccggcagc
gttggcctgcagggcccaagaggactaagaggccttcctggtccaatgggtccagctggt
gacagaggtgacatcggtttcagagggccacctggaatgccaggacctccagggaaagcc
ggagaccaaggaaccaaaggacctcaaggattccgggggcccaaaggcgatactggtaga
cctggaccaaaaggaaacccgggggctcgtggactcataggagaacctggcatgcctggc
aaggatggacgagatggagctcctggactcgatggtgagaagggtgatgcggctcgcatg
ggtgctcctggagagaagggaccgaacggactgcctgggctgcctggaagagcaggtctt
aaaggctcaaagggtgaaccaggcagtcctggagagatgggagcggcgggtccctctgga
gagccaggcatccctggcgacgttggtattcctggtgagagaggcctgccaggacccaga
ggagcaactggcccgcttggtcttcagggccccatgggagcccccggtgtcagaggtttc
cagggtcccaaaggtgccagtggtgaacctggccttcctggtccaacgggaattcgtgga
gagttaggtgacaggggtcctactggtgtccctggtcccaaaggtaaccagggcattgct
ggagcagatggcctcccgggtgacaaaggagaactgggtccctttggtccccccggccaa
aaaggagagccaggaaaaagaggagaacttggtccgaaaggtgtgcaaggacctaatggg
acagctggagcaccagggatcccgggacacccagggcccatgggacatcaaggggagcaa
ggtgttcccggcatcacgggcaaaccggggcctcctggcaaagaggccagtgaacaacgt
attagagaactctgtggggaaatgataaatgatcaaattgcccagttagctgctaatctg
cggaagcccttgtctcctggaatgacgggtcgtcctggcccggctggtcccccaggtcct
cctggcgccgtgggaagcgttgggcatccaggtcctcgtggtccccccgggtacagaggg
ccaacaggagaacttggtgaccctggtcccagaggtgacgctggcgaaaagggagataaa
ggacctgttggtcaaggtattgatgggcctgacggtgatcaaggacttcaaggaccaccc
ggtgtacctggaattactaaaaacggtcgggacggtgctcagggtgaacccggtcttcca
ggggatcctggtactcctggtgctattggggctcagggaactccaggaatatgtgacacg
tcggcttgcatgggagctgttggagtatcgacttccaaaaagtcataa
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