Rissa tridactyla (black-legged kittiwake): 128917491
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Entry
128917491 CDS
T09443
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128917491 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128917491 (COL5A1)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128917491 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
128917491
NCBI-ProteinID:
XP_054076651
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All DBs
Position
14:2500813..2661130
Genome browser
AA seq
1837 aa
AA seq
DB search
MDTHTRWKRRSWIRSRSVPAALVLLGALSLGRAAEPADLLKVLDFHNLPDGITKTTGFCT
SRRSSKEADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGGQSFLISIYNEQ
GIQQIGVEMGRSPVFLYEDHTGKPGPEDYPLFRGINLADGKWHRVAISVQKKNVTLILDC
KKKITKFLDRSDHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVADPRAAHDYCEHYSPD
CDTAIPDAPQSQDPNQDEYYTDGEGEGDTYYYEYPYYEDVDEAVKPETPTTKPGTPEVAA
GERPETKQDYPSPTPSPEGGDPGKRTEGDATVDDPLVDEYNYETINEEYFTPLPYEDVNY
NEEVDPQGGLTENAVEAELPTSTVITYNETDAAQGGDDLDKDFTEETIKEYDGNYYDNYY
DRTVSPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLVEGPPGPEGPAGLPGP
PGPTGPVGLMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFSGGGDAGSKGPLVSAQ
EAQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEAGEMGPQGPRGIQGPPGP
AGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGNRGEPGPHGPPGAPGEDGE
RGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVAGMDGQTGPKGNVGPQGEPGPPGQ
QGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPPGP
QGPIGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGP
EGPKGRSGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGTRGT
PGKPGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFPGP
KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGP
PGEQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPIGAPGLKGNEGPPGP
PGPAGSPGERGPAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGL
PGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPAGADGEPGP
RGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGP
PGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEVGLPGPKGERGEKGEAGPSGAAGP
PGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE
PGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGI
PGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGD
RGLPGPQGSAGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGLPGP
PGPPGPPGEVIQPLPIQSSKRTRRNIDASQLVDDGNADNYMDYADGMEEIFGSLNSLKLE
IEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCI
FPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLLSASAHQN
ITYNCYQSVAWHDATTDSYDKAIRFLGSNDEEMSYDNNPYIRAVLDGCAAKKGYQKTILE
INTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFMG
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcacacgcggtggaaaaggcgcagttggatacggagccggtcggtacccgct
gccctggtgctgctgggtgccctgtccctcggccgggcagctgaacctgcagacctcttg
aaggtattagattttcataatttacctgatggtataacaaaaacaacagggttttgcaca
agcagaagatcttcgaaagaagcagatgttgcttatagagtaacaaaagatgctcaactt
agtgcaccgacaaagcagctgtatcctgcttccccattcccagaggacttctccattcta
accactgtaaaagcgaagaaaggaggtcagtccttcttgatctcaatttacaatgagcaa
gggatccagcaaattggtgtggagatgggtagatctcctgtattcctgtatgaagaccat
acaggaaagccaggcccagaagactatcctctctttagaggcattaacctagcagatggc
aagtggcacagagtagctatcagcgtgcagaagaaaaatgtcaccttgattttggactgt
aaaaagaagataaccaagttcttggaccgaagtgaccatcccatcattgacgtcaatggc
atcattgtattcggaacaaggatattggatgaagaagtctttgagggtgacatccagcag
ctcctgatcgtggcggacccccgagcagcccacgattactgcgagcactacagccccgac
tgcgacaccgccatccccgatgccccccagtcccaggaccccaaccaggatgaatactac
accgacggggagggagaaggtgacacctactactacgagtacccctattacgaagacgtt
gatgaagctgtaaagcctgaaacacccaccaccaaacctggcactcccgaagtggctgct
ggagagagacctgaaaccaagcaggactatccttcccccacgccatcacccgagggaggg
gaccccgggaagcggacggaaggggatgctacggtggatgaccccctcgtggatgagtat
aattatgaaaccattaacgaagagtacttcacgccgctcccctatgaagatgtcaactac
aacgaagaagtagacccccagggcggactcactgaaaacgccgtggaagctgaactcccc
acgagtaccgtcatcacctacaacgagaccgatgctgctcaaggaggagatgacctggat
aaagacttcactgaggaaacaataaaagaatacgatgggaattattatgataattattat
gaccgaaccgtctctcccgatattggccccggcatgcccgctaaccaggacaccatctac
gaagggatcggtggcccacggggcgaaaaaggacagaagggggagcctgcgattattgag
ccgggtatgctggtggaaggcccacctggtcccgaaggtccagcaggccttccaggacct
ccaggaccaactggacccgtgggcttaatgggtgaccctggggagagaggaccacctggt
cgcccaggtcttccaggagcagatggtttaccgggaccaccggggacaatgcttatgttg
cctttccgctttagtggaggaggagatgctggctctaaaggacctctcgtttcagcccag
gaggcccaagcccaagccatcctgcagcaggccaggctggcgctgagaggaccagcgggt
ccaatgggtctgacggggcggccgggccccatgggacccccgggcagtggaggactaaag
ggagaagctggagaaatgggacctcagggtccacgaggcatccagggtcctcccggtccg
gcaggaaaaccaggccgcaggggacgagccggcagcgacggtgcccggggaatgccaggc
cagacgggaccgaagggtgaccgagggtttgatggcttggctggtttgcctggtgagaag
ggaaatagaggtgagccaggcccccacggacccccgggggcacccggagaggatggggag
aggggagatgatggagaagttggacccagaggtctacctggagaacctggaccccgagga
ctgttgggaccgaaggggccgccaggacccccagggccaccgggtgtggctggtatggat
ggacaaacaggtcccaaggggaatgtgggtcctcaaggtgagccgggtcccccaggacag
cagggtaacccaggtgctcagggtcttccaggtccacaaggcgcgatcggtcccccagga
gagaaagggccgctgggcaaacctggtcttcctggcatgcctggtgcagatggtcctccg
ggtcatcctggcaaggaaggtcctcctggagagaaggggagtcagggtccaccaggtcct
cagggccccatcggttatccaggaccacgcggagtcaagggagcagatggtgttcgtgga
ctgaaaggcaccaaaggtgaaaagggtgaagatggcttccccggcttcaaaggtgatatg
ggcatcaaaggagaccgcggggagattggacctcctgggccccgaggtgaggatggtcct
gaaggtcccaaaggtcgctctggccccaatggagatcccggtcctcttggtcctgctgga
gagaagggaaaactcggcgtgccagggctgccgggctacccaggcaggcagggcccgaag
ggctcaatcggcttcccaggatttccaggagccaatggagagaagggcacacgggggacg
cctggcaaaccaggtccaagggggcaacgcggtccaacgggtccacgtggggaaagaggc
cctaggggaagcactgggaaacctggcccaaagggcaactctggtggtgatggcccccct
ggtcctcctggcgaaaggggaccaccagggcctcaaggaccaactggatttccgggacca
aaaggcccccctggtcctcctgggaaggacggattgcctggtcaccccggacagagagga
gaaaccggtttccaaggcaagactggccctccaggaccccccggtgtcgtaggccctcag
ggtccgactggtgagactgggccaatgggtgagcggggacatccaggtcctccgggtccc
ccgggtgaacaaggtcttcctggcctcactggaaaagaaggaaccaagggggaccctggt
cccgccggcctcccagggaaggacggtccccccggcttgcgaggcttccccggggagaga
ggtctccctggccccattggtgctccagggctgaaaggcaacgaaggtcccccaggcccc
ccaggtccagcaggctctcctggcgagcgcggacccgcgggctcagctggccccataggc
ttgccagggcgacctggcccccagggacctccgggacccgcaggtgaaaagggagcccca
ggtgagaagggtcctcaaggaccggctggccgggacggcatccagggcccggtgggactg
ccgggtccagcaggtcctgtcggcccccccggagaggatggagacaagggcgagatcggg
gagcctggccagaagggcagcaaaggcgacaaaggggagcagggtccgccaggacctacc
ggcccgcagggtccaatcggtcagcctggcccagctggtgccgatggagagccagggccc
agaggacagcaaggcctctttggtcagaaaggtgacgaaggaccccgaggattccctggt
ccccccggcccagtgggcttgcagggcttgcctggaccacctggggagaagggagaaaca
ggtgacgttgggcaaatgggcccgccaggcccacctggacccaggggtccatctgggcca
ccaggagcagatggtccacagggtcctcccgggggaataggaaaccctggtgcagtagga
gagaagggtgaacctggtgaatctggtgagcctggtcttcctggcgaggttggcctcccg
ggtcctaaaggtgaaagaggtgaaaagggtgaagcaggtccctctggtgctgctggtcca
cctggccccaaaggtccaccaggggatgacggtcccaaaggcagccctggtccagttggt
ttccctggtgaccctggtcctcctggagaacctggtccagccggtcaagatggtccccct
ggtgacaaaggtgacgatggcgaacctggacagaccggttcccctggtcccacgggagag
ccaggcccctccggacctccaggaaaaaggggccctcctggtccagctggtcccgaagga
aggcaaggagagaaaggagccaagggtgaagctggtttggaaggacctcctgggaagact
ggcccaattggtccccaaggtgctccagggaaacctggccccgatggcctccgagggatt
cctggtccagtcggtgaacaaggtctcccgggatcccctggcccagatggtcctccaggc
ccaatgggcccgccgggtttgcctggtcttaaaggagactctggtcctaaaggagagaag
ggacatccaggtttaattggtcttattggaccaccaggagagcagggagaaaagggtgac
agaggtctcccaggcccccagggctcagcaggacctaaaggagagcagggtatcacaggt
ccttctggaccaattggacctccagggccaccaggattaccgggtccacctggtcccaaa
ggtgctaaaggatcatcaggtccaacaggtccaaagggtgaatcgggtcttcctgggccc
ccagggcctcctggtcctcctggagaagtcatccagccgctgcccatccagtcttccaag
cggaccaggcgaaatattgacgccagccagctggtggacgatggaaatgccgacaactac
atggactacgcagatggcatggaggaaattttcgggtcgctgaattccttgaaactggaa
attgagcaaatgaagcatcccttgggcactcaacataacccagcgcgtacctgcaaggat
ctgcagctctgtcaccccgacttcccagacggtgaatactgggttgatcctaaccaagga
tgttccagggactctttcaaagtttactgtaatttcacagccggtggagagacttgcatc
ttccctgataagaaatctgaaggagctagaattacttcttggccaaaggaaaacccaggc
tcctggttcagtgaattcaagcgcggtaaactgctctcctacgtggattcagacgggaac
cccatcggagtggtgcagatgactttcctccggctcctgagcgcctcggcccaccagaac
atcacttacaactgctaccagtccgtcgcctggcacgacgccaccaccgacagctacgac
aaggccatccgcttcctgggctccaacgacgaggagatgtcctacgacaacaacccctac
atccgagccgtcctggacggctgcgcggcaaagaagggctatcagaagactatcctggaa
atcaacacgcccaaagtagagcaagtacctatagtcgacatcatgttcaatgacttcgga
gaagcgtcacagaaatttggattcgaggtgggaccagcttgcttcatgggctaa
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