Rissa tridactyla (black-legged kittiwake): 128917557
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Entry
128917557 CDS
T09443
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128917557
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128917557
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128917557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
128917557
NCBI-ProteinID:
XP_054076814
LinkDB
All DBs
Position
14:complement(10420710..10524976)
Genome browser
AA seq
1804 aa
AA seq
DB search
MRCGALALLCALLPLCPAGLDPPEPGSGLHADEVNLLDKITSHAQDLSNISFGYDEANCS
VLEIGQYATLNIPTREAFGDRFADELSVLMKLRYSLKEDTSLVTILSHRSHVIFQIRINP
YALVFVTTRRRHYEFPVSFLGDGRWHQVALSISLERLELHVDCRLVDRVSWSNYFGMGVN
TEGLIIIGGLIESFEIPFKGALQQLTFVMGDPAAAGEHCRSYNSTCTRSFNLNRFGFPWQ
LSPAWPEVPKETNEIQDSSAQDSRLTSSDLTLGPPWTWEDAQETLNPQPDGSTLNSLSAT
EMSSAEEEEGSLSIEDEGFELLNSTYNKITGPGRPGFGWRSPWVPGSSGPSIKTQRAAKK
ERASDPREENVTTEKLTGDAGTRRQLSPGKPGDAITDLDAPAIFAKVSPSGHQAAIPKGP
LGTESAVDVPDHPLVAPSPAVPGLGDNIAHPEHPISPVAHVQQGRAKPGPPGLPGPPGLP
GCPGRRGLVGPKGDKGYPGAMGRTGPPGDPGPVGIPGVPTIVLWRNSREDWQMFTQSSFY
QLLHAGWPRKPGAPGPPGHPGKAGAPGPCGEPGEPGQKGQRGYTGEPGLQGLPGRVGYPG
SDGFPGLDGKPGPWGLPGEQGLQGFQGDRGLAGEKGEEGFLGDPGPVGEKGEKGAKGVKG
ENGLPGPAGLHGMPGLKGATGFQGPMGLEGEGGSVGPPGPAGPMGEPGQPGSVGCQGVNG
SQGEMGPPGLPGPRGPKGPQGLQGRRGPPGLRGTQGPAGMEGCIGPKGDTGADGAPGLRG
QLGQEGPGGFIGLPGSKGTQGEQGCRGPAGAKGDLGAKGEKGPYGAQGAKGPPGVRGQVG
LQGFPGPRGAAGPQGPDGEEGQIGPVGLNSSEGPKGCRGPDGPKGSPGPRGARGRVGQRG
LVGVPGLPGLRGVLGVEGAEGKPGTQGSPGTMGSPGRRGQLGFAGLEGDRGHAGPPGSIG
SLGKPGPDGDPGSPGPKGLPGKPGSEGPQGPVGTYGYPGPAGDRGRPGRRGDKGEMGTQG
PPGFPGKAGPKALPGPPGPRGAPGSQGRAGDPGPRGLPGLPGVPGVRGLDGIPGKPGSTG
ETGAPGAAGAAGPPGYPGREGPNGPEGPSGMRGEKGDVGDPGEVGVSGLDGEQGPPGPPG
AEGQPGPKGEQGEAGTCGAPGIRGDPGDPGDDGPEGPPGRRGEEGKEGDAGDAGDPGEPG
PQGQKGDAGPRGLPGAPGPGAATGELGEKGHKGEKGQEGLLGQVGVTGAVGPAGARGWFG
GTGLRGPPGLDGPEGAKGDPGPRGMDGSAGAAGLEGLAGDDGLKGDGGKPGPAGAAGARG
PAGIPGLRGFTGHKGARGTVGTKGEPGRQGLLGPPGEAGPTGPSGTEGLAGAKGEPGKLG
KPGQTGSPGQAGPRGRKGRKGEKGDVGHKGEEGIPGEAGRRGKRGKAGHRPPRGPRGPKG
YPGDEGLEGPQGPQGPYGIPGLKGMKGDPGPKGHKGEKGSVGDLGQQGDDGFKGKPGPHG
VPGRTGPKGQEGDTGPPGPRGHPGIPGTPGLSGPKGLKGFPGLPGPRGTPGLPGLAGPPG
PRGPALMLSREELRHLIYPSNHLNYTAVWTLLDTLSQELQALIQHPNGTKTNPAATCKEL
LLAHPNLPDGQYYIDPNQGSPQDALVAFCNFTAGGETCIAPVRNQVPIKAWLSAYTSEDT
FEWFSALPGGFLLEYGGASPVQLRFLRLHSRLATQKVSYSCRPAPEQGQPQPEKEIHFLA
DSREQSYAASLHGCVLDNESSITDTIFQFATEELSLLPLRDLAVFHNGDTSHQFGFTVGP
VCFS
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgcggggcgctggcgctgctctgcgccctcctgcccctctgcccggcggggctg
gacccccccgagccgggatccgggctgcacgcagatgaagtgaacttgctggacaaaatt
acttcgcacgcgcaggacctcagcaatatttcctttggctatgacgaagccaactgcagc
gtcctggagatcgggcagtacgccaccctcaacatccccacgagggaggcgtttggggac
aggtttgcagatgagctgagtgtgctgatgaagctcaggtactcgctgaaggaggacacc
agtctagtgaccatccttagccatcggagccacgtgatcttccagatcaggattaaccca
tacgccttggtctttgtcaccacgaggaggagacactatgagttcccagtttcctttctc
ggcgatgggcgctggcaccaagttgctctcagcatctccctggagaggctggagttgcac
gtggactgtcggctggtggacagagtgagctggtccaattatttcgggatgggagtgaac
accgaggggctgatcatcatcggaggcctgatcgaatccttcgagatcccctttaagggt
gctctacagcaactgacctttgtgatgggagacccagcggccgccggcgagcactgccgc
agctacaactcgacatgcacacgctccttcaacctcaaccgcttcggtttcccgtggcag
ctttcaccagcctggccagaggtaccaaaagaaaccaatgaaatccaggactcgtctgct
caggactccagactcaccagttcagatttgaccctggggccgccttggacgtgggaggat
gcccaggagaccctcaacccccagcctgatgggagcaccctgaattcactctctgctacc
gagatgtcgtcggctgaggaagaggagggcagcctttctattgaggatgaaggctttgag
ctgttgaactccacctacaataaaatcacaggccccggcaggccagggtttggctggaga
agcccatgggtccctggtagctccggtccctccatcaaaacacagcgagcagccaagaag
gagcgtgcctctgacccccgggaggagaacgtcaccacggagaagctgacgggtgatgcg
ggcacccggcggcagctctcgcctggcaaacccggcgatgccatcactgacctggacgca
cctgccatcttcgccaaggtctccccatcaggacatcaggcagccatccccaaaggtccc
ctggggacggagtcagcggtggatgtcccagaccatccgctggtagcacccagccctgct
gtcccagggcttggggacaacattgcccacccggagcaccccatctcgccggtggcacat
gtgcagcagggtcgtgcgaagccgggaccaccggggctgccgggaccaccagggctgccg
ggctgtcctgggagacgtggactggtgggacccaaaggagacaaagggtaccctggagcc
atggggcggacgggacccccgggtgacccgggccctgtgggcatccccggtgtccccacc
atcgtcctctggaggaactccagggaggattggcagatgttcacgcaatcatcgttttac
cagcttctccatgcaggctggccgagaaaacctggcgcccccgggcccccaggacatcca
gggaaggcaggagcacctggaccctgcggggagccgggggagccggggcagaaaggccag
cgggggtacacgggtgaaccggggctccagggcttgccgggacgtgtgggttaccccggt
tcagatggcttccctggcctggatggcaaacctgggccatgggggctgccgggagagcag
ggactgcagggcttccagggggaccgggggctggctggcgagaagggagaagagggtttc
ttgggtgaccctggaccagttggggagaaaggagagaagggagcaaagggggtgaagggt
gaaaatggcctgccaggtcctgctggacttcacgggatgccgggtctgaagggtgcgaca
ggcttccagggccccatggggctggagggagaaggtggctcagtgggtcccccgggccct
gccggccccatgggagagccgggccagccgggatccgttggatgccaaggtgtcaacggc
tctcagggagaaatgggtcctcctggcttgcccggtccccggggccccaagggaccgcag
ggcttgcaggggagacgcggcccccccggcctcaggggcacgcagggtccagctgggatg
gagggatgcattggtcccaaaggagacaccggcgcagatggggcccccgggctgagggga
cagctgggacaggagggccctggggggtttattggcctgccaggctcaaaaggcacccaa
ggagagcagggctgtcgaggtccagctggagccaagggagacctgggagccaaaggagag
aagggtccatatggagcgcaaggagctaaagggcccccaggggttcggggccaggtcggc
ttacagggctttcccggcccccgaggagcggcgggacctcagggaccagatggagaagaa
ggccagatcggcccggtggggctgaacagcagcgagggaccgaagggatgccgaggacct
gatggcccgaagggaagcccaggaccacggggagcccggggccgtgtgggtcagcgaggg
ctggttggagtccctgggctgcccggcttgcggggtgtcctgggagtggaaggtgcagaa
ggaaagcctggtacacagggttccccagggaccatgggcagcccaggcaggaggggacaa
ctgggttttgccggcttggagggggaccgcgggcacgcaggacctccgggatcgataggc
tctctgggaaaacctggacctgatggagacccaggttcccccggcccaaaggggctgcct
gggaagcctggatccgaggggccacaaggacctgttggcacctatggctacccgggacct
gccggcgaccgcgggaggccggggcgcaggggagacaagggagaaatgggaacccaaggc
ccaccgggatttccaggaaaagccggtcccaaggccctgccaggtccccctggtccacga
ggcgctcccggctcccagggcagagcaggagacccgggtcctcgagggcttccagggctg
cctggtgttcctggcgtgcgggggctggatggcatcccaggaaagcctggctcgacagga
gaaacaggggctcccggagcggctggtgctgctggcccgcctgggtacccgggccgagaa
ggtccaaatggacctgaagggccttcggggatgagaggagagaagggtgatgtgggagat
cccggggaagtcggcgtcagcgggctggatggagagcagggaccgccgggaccaccggga
gcagagggtcagccgggacccaaaggcgagcagggagaggcgggaacctgcggagctccc
ggcatcagaggggaccccggggatcctggggacgacgggccagaagggccaccggggagg
cgcggggaggaagggaaggagggtgatgctggtgatgctggagacccaggggagccagga
ccacaggggcagaagggtgacgctggtcccaggggccttcccggagcgcctggcccggga
gctgctacgggggaacttggagaaaaaggccataaaggagagaaggggcaagaaggtttg
ctgggccaggtcggtgtcactggagctgtgggacctgccggagccagaggatggtttggt
gggacgggtctccgaggtcctcctgggcttgacggtcccgagggagcaaagggagatcca
gggccacgaggcatggatggatctgctggtgctgcaggattagagggactcgctggagat
gatggactcaagggagatggtggcaagcccggcccggcgggcgcagcaggtgcccgggga
ccagcgggcatccccgggctccggggtttcaccgggcacaaaggagccagaggaaccgtg
ggcaccaagggagaaccgggccggcagggtcttctcgggccaccgggcgaagctggaccc
acgggcccgagcggcactgagggcctggcgggtgcgaaaggggagccaggcaagctggga
aaaccggggcaaacggggtctccgggacaagccggtcctagagggcggaaaggtcgcaaa
ggagaaaagggcgatgtggggcacaaaggggaagaagggatccccggagaagctggcaga
cggggcaagcgaggcaaggcgggccaccggcccccgagaggtccccgaggacccaagggc
tacccaggtgacgaggggctggaaggaccccagggcccccagggaccctacggcatcccg
gggctgaagggcatgaaaggagaccctggacccaaaggacacaagggcgagaagggcagc
gtgggcgacctgggccagcaaggggatgatggcttcaagggcaagccgggaccccacggt
gtccctgggaggacaggacccaagggacaggagggtgacaccggtccccccggcccgcgg
ggacaccctggcatccctgggacaccgggtttgtctggacccaaagggctaaaaggcttc
ccggggctgccgggacccaggggcacaccaggactgccgggtctcgccggcccccctggt
ccccgtgggcccgcgctgatgctgtcccgggaggagctgcggcacctaatttatccctcc
aaccacctgaattacaccgcggtctggactctgctggacaccctgagccaggagctgcaa
gccctcatccagcatcccaacggcaccaaaaccaacccagcggccacctgcaaggagctg
ctgctggctcatcccaaccttcctgacgggcaatactacatcgaccccaatcaaggcagc
ccccaggacgcgttggtggccttctgcaacttcacggcggggggcgagacctgcatagcc
cccgtccgcaaccaggtccccatcaaagcttggctgagcgcctacacctccgaggacacc
ttcgagtggttcagtgccctgcctgggggcttcctgctggagtacgggggggccagcccg
gtgcagctgcgcttcctgcgcctgcacagccgcctggccacccagaaggtctcctactcc
tgcagaccggcccccgagcagggccagccccagccggagaaggaaatccacttccttgcc
gactcccgggagcagagctatgcagccagcctgcacggctgcgtgctggacaacgagtcc
tccatcaccgacaccatcttccagtttgccaccgaggagctctccctgctgcccctgcgg
gacctggccgtcttccacaacggcgacacctcccaccagtttggtttcacagtcggacca
gtttgcttcagctga
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