Rissa tridactyla (black-legged kittiwake): 128918273
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Entry
128918273 CDS
T09443
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtd03036
]
128918273 (CHD5)
Chromosome and associated proteins [BR:
rtd03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128918273 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128918273
NCBI-ProteinID:
XP_054078243
LinkDB
All DBs
Position
16:677324..708856
Genome browser
AA seq
2007 aa
AA seq
DB search
MLPNYLWTQISKSRQCAGASLCPCFLRMKRRLPKPQVFVCERQQGAGQGKCWAGAPQLDS
TRAPTRGSCGSAAEDDDGVLEGLEEFFAEEQVVVQKKKKSKKLKDGKAAKIKRRKKEGSN
DEMTDNEEEIEEKSESEGSDYSPNKKKKKKLKDKKEKKPKRKKKDEEEDDNDDGGLKEPK
SSAQLMEEWGLDDVDYVFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKW
REFSANNPFKGSSAAAAAAAVAAAVETVAVAPPLTASPQQSAVPTVIRKAKTKEGKGPGV
RKKIKGSKDGKKKGKGKKMGGLKFRFGGIPSKRKKGSSSEEEEREESDFDSASINSSSVR
SECSAGLGKRGKRRRKKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDP
ELEKAPEGKWSCPHCEKEGIQWEPKEEEEDEEEGGEEEEDDHMEFCRVCKDGGELLCCDT
CPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWAWKEPPATPLPPALPAPD
AELALPPPKVLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPP
AFDYGSGDEDSQREKRKNKDPQYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDIHYLI
KWKDLPYDQCTWEIDEIDIPYYENLKHLYWNHRELMLGEDTRPLKKLNKKGKKLKEEKLE
KPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKT
VQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRE
NEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRL
KNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIS
KEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALN
SKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKM
LKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQ
QFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRA
SVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMVSQG
QRIAMPDAVTPFSDSLSTKAGAATPSMKKKHGGTPPGDNKDVEDSSVIHYDDAAISKLLD
RNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLLRHH
YEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERP
EGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAF
NSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVM
SLVRKKVQEFEHVNGKYSTPDLILEGLESKKSSEIVSSDPNTPVPASPAHVHTGPVALAD
KIETQLGFQEEKDQVEQKSRKVSDIQVPASAEKVENEEHPESCDSKEKPREEKQEESEKA
EPSPEPLVKDEGIQEKEKPLEKPELNSSPGKGEDKDVKPAEEAKVEEKEHSEAQQNGDKE
EEEDGKKDDRNVNFRFMFNIADGGFTELHTLWQNEERAAISSGKIYDIWHRRHDYWLLAG
IVTHGYARWQDIQNDPRYVILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLR
RAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEEL
LSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLATRGGDATVQQGSFGSSQIYNNNF
GPNFRGPGPGGIVNYSQMPLGPYVTDI
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atgctccctaattacctgtggacccagatcagtaagagcaggcagtgcgcgggggcctcc
ctgtgcccctgtttcctgagaatgaaacgcagactgccaaaacctcaggtgtttgtgtgc
gagcggcagcaaggagctgggcaggggaagtgctgggcaggcgctcctcagctggactct
acgagggctcccacgaggggcagctgtggatcagctgcagaagacgatgatggggtgctg
gaaggactggaagagtttttcgcagaagagcaagtagtcgtgcagaaaaagaagaaatcc
aagaagctgaaagatggcaaggctgccaaaatcaagaggaggaagaaggaggggagtaat
gatgaaatgacagacaatgaagaggagattgaggagaaatctgagagtgaagggagtgac
tattcccctaacaaaaagaaaaagaaaaaactgaaggacaagaaggagaaaaagccgaaa
cggaagaagaaagatgaagaggaggatgacaatgacgatggaggtctaaaggagcccaag
agctcagcccagctgatggaggagtggggccttgatgatgttgattatgttttctcagaa
gaagattatcatactctgactaattacaaggctttcagccagttcctcagacctctgatt
gccaagaagaaccccaagatccccatgtccaagatgatgaccgtgcttggtgccaaatgg
cgagagttcagtgccaacaacccgttcaagggcagttcggcagcagcggcagcagcggct
gttgctgcagctgtagagaccgtcgccgttgccccgccgctcaccgccagcccccagcag
tctgctgtgcccaccgtcatcaggaaggctaagaccaaggagggcaagggtccaggcgtc
aggaagaaaatcaagggctccaaagatggcaagaaaaaggggaagggaaaaaagatggga
ggcttgaaattccggtttggaggaatccccagcaaaaggaaaaagggctcctctagcgaa
gaggaggaacgggaggaatctgactttgacagcgccagcatcaacagctcctcagtgcgc
tccgagtgctcggctggcctggggaagagagggaagaggaggagaaagaaaaagaggatc
gaagaaggggacgggtatgagacggaccaccaggactactgtgaggtgtgccagcaggga
ggggagatcattctgtgtgacacctgtcctcgcgcctaccacctcgtctgcctggacccc
gagctggagaaggcccctgagggcaagtggagctgcccccactgcgagaaggagggcatc
cagtgggagccgaaggaggaggaggaggatgaagaggaaggcggcgaggaggaggaggat
gaccacatggagttctgccgggtctgtaaggacggaggggagctgctgtgctgcgacacc
tgcccgtcctcctaccacctccactgcctgaacccgccgctgccagaaataccaaacggt
gaatggctctgccctcgctgtacatgccctcccttgaagggcaaagtccaacgcatcctg
cactgggcctggaaggagccgccggccaccccgctcccgcctgcgctgcctgccccggat
gcggagctggctctgcccccgccaaaggtgctggaggggatcccggagcgcgaattcttc
gtgaagtgggcaggcctgtcctactggcactgctcctgggtcaaggagctgcagctggag
ctctaccacaccgtcatgtaccgcaactaccaacggaagaacgacatggacgagccgcca
gccttcgactacggctctggggacgaggacagccagagggagaagcggaagaacaaagac
ccgcagtacgccaagatggaggagaggttctaccgctacggcatcaagcccgagtggatg
atgatccaccgcatcctgaaccacagctttgataaaaagggagacatccattacctgatc
aagtggaaagacctgccgtatgaccagtgcacctgggagatcgatgagatagacatcccg
tactacgaaaacctcaaacacctctactggaaccacagggagctgatgctgggggaggac
acgcgccctctgaagaagctgaacaaaaaggggaaaaagctgaaagaggagaagctggaa
aagcctccagaaacgcctcttgtggatcctacagtgaagtttgacaagcagccgtggtac
atcgatgccacgggaggcacgctccatccttaccagctggaagggctgaactggctgaga
ttttcctgggcccaagggacagatacaatcctggccgacgagatggggctggggaagact
gtgcagactattgtgttcttgtattccctgtacaaggagggccactcgaaagggccgtat
ctggtcagtgcccctctctccaccatcatcaactgggagcgcgagttcgagatgtgggca
cccgacttctatgtcgtgacctacacgggggacaaagaaagccggtcagtcatccgggaa
aatgagttttcttttgaagacaacgccatccggagtggaaagaaggtcttccggatgaag
aaggaagcccagatcaagttccacgtcctgctcacctcctatgagctgatcactattgac
caggcggtgctgggctccatagagtgggcctgtctggtggtggacgaagcgcacaggctg
aagaacaaccagtccaaattctttagagtattaaatagctacaagatcgattacaagctg
ctgctcactgggactccgctccagaacaacctggaagagctcttccacctgctcaatttc
ctgactcccgagaggtttaataacctggagggcttcctggaggagtttgccgacatctcc
aaggaagatcagatcaaaaagctccatgatctgctgggtccccacatgctgcggcggctc
aaggcagatgtgttcaagaacatgccggccaagacagagctgatcgtgagagtggagctg
agccagatgcagaagaagtactacaaattcatactgacgaggaatttcgaagccctgaat
tcgaagggtggtgggaaccaggtctcactgctcaacatcatgatggacctgaagaagtgc
tgtaatcacccgtacctcttccctgtggcggcggtggaggccccagttctgcctaatgga
tcctacgatggcaattctttggtcaaatcttctgggaaactgatgctgctccaaaagatg
ctgaagaagttgcgggatgggggtcacagagttctgatcttctcccagatgacaaagatg
ctggacttgctggaggatttcctggagtacgaaggctacaagtacgagcggatagacggg
ggcatcaccggcggcctgcgccaggaggccatagacaggtttaacgctcctggtgcccag
cagttctgctttctcctctctacccgcgccggcggtctgggcataaaccttgctacggcc
gacacagtcattatttatgattctgactggaatccccacaatgacatccaggcattcagc
agagctcaccgaatcgggcagaacaagaaggtgatgatctatcgctttgtgacaagagcc
tccgttgaagagcgcatcacccaggtggccaaaaggaagatgatgctcacccacttggtg
gtccgcccggggctcggctccaagtcgggctccatgaccaagcaagagctggacgacatc
ctcaagtttgggacagaagagctcttcaaggatgacgtggaaggtatggtgtctcaggga
cagcggattgccatgccagatgctgtcacccctttctctgactcactgtcaaccaaagcg
ggtgcagcgactcccagcatgaaaaaaaagcacggtggcaccccaccaggtgacaataag
gatgtggaggacagcagcgtgatccactacgacgacgctgccatctctaagctcctggac
cgaaaccaggatgcgactgatgacacggagctgcagaacatgaacgagtatctcagctcc
tttaaagtggcccagtatgttgtcagagaagaggacggtgtggaggaggtggaacgtgag
atcatcaagcaggaggagaatgtggaccccgactactgggagaagctgctgcggcaccac
tatgagcagcagcaggaagatctggccaggaacctggggaaagggaagagaatccgcaag
caggtcaactacaacgacgcctcgcaggaggaccaagagtggcaggacgagctctccgac
aaccagtcggagtactccatcggctctgaggatgaggatgaagactttgaggagaggcca
gaaggtcagagtggcagaagacaatcccggaggcagctgaagagtgaccgggacaagcct
ctccctcctttgctggcgagagttggggggaatatcgaggttctcggcttcaacgcccga
cagcgcaaggctttcctgaacgccatcatgcgctggggcatgccgccccaggacgccttc
aactctcactggctggtccgggatctgcgagggaagagtgagaaggagttcagggcgtat
gtctccctcttcatgagacatttgtgtgagcctggggctgacggtgccgagacctttgcg
gacggtgtcccccgggaagggctgtcacggcaacacgtgctgactcggataggagtcatg
tcactagtaaggaagaaggtccaggagtttgagcatgtcaatgggaagtacagcacccca
gatctgattctcgagggcctggagagcaagaagtccagtgagattgtgtcttcagatccc
aacacccccgtcccggccagcccagcacacgtgcacacaggacctgtggcccttgcagac
aaaatagaaacacaactcgggttccaggaggaaaaggaccaagtggagcagaagtccagg
aaagtgtctgacatccaggtgcctgcgagcgccgagaaggtggaaaacgaagagcaccca
gaaagttgcgacagcaaagagaaaccaagggaagagaagcaagaggagagtgaaaaggca
gagccttctcctgagcccctggtgaaagatgaggggattcaagagaaagagaagcctttg
gagaagccagagttgaacagcagcccaggaaaaggggaggacaaagatgtcaaaccagca
gaggaggccaaggtggaggagaaggagcacagcgaggctcagcaaaacggtgacaaagag
gaagaggaggatggaaagaaggatgacagaaatgtgaacttccgattcatgttcaacatt
gctgacggtggctttacagagctgcacacgctgtggcagaatgaggaaagggctgccatc
tcctctggcaagatctacgacatctggcaccgccgacatgactactggcttttggcagga
attgtcacccatggctatgcccgctggcaggacatccagaacgacccacgctacgtgatc
ctgaacgagcccttcaagtcggagatacacaaggggaactacctcgagatgaagaacaag
ttccttgcccggcggttcaagctgctggagcaggccctggtgatcgaggagcagctgcgg
agggctgcgtacctgaacatgacccaggaccccaatcacccggccatggcattgaacgcc
cgtctggctgaagtggagtgccttgccgagagccaccagcacctctccaaagagtccctg
gctgggaacaagcccgcgaacgccgtcctgcacaaggtgctgaaccagctcgaggagctg
ctgagcgacatgaaggctgacgtgacgcgcttgccctccatgctgtcccgcatcccgccc
gtggctgcccggctgcagatgtccgagaggagcatcctcagccgtctggccacccgtggg
ggggacgccaccgtccagcagggctccttcggctcctcccagatctacaacaacaacttt
gggccaaatttccgaggtcccgggccaggcgggattgtcaactacagtcagatgcctctg
ggaccgtatgtgaccgatatttag
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integrated database retrieval system
