KEGG   Rissa tridactyla (black-legged kittiwake): 128918599
Entry
128918599         CDS       T09443                                 
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
rtd  Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04140  Autophagy - animal
rtd04142  Lysosome biogenesis
rtd04148  Efferocytosis
rtd05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rtd00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    128918599 (VPS11)
   04140 Autophagy - animal
    128918599 (VPS11)
   04148 Efferocytosis
    128918599 (VPS11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    128918599 (VPS11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rtd04131]
    128918599 (VPS11)
Membrane trafficking [BR:rtd04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    128918599 (VPS11)
   Hops complex
    128918599 (VPS11)
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C VPS18_solenoid_2nd Clathrin zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-rbx1 TPR_Vps41 Beta-prop_WDR36-Utp21_1st TPR_GEMI5 Beta-prop_WDR3_1st zf-RING_5 zf-C3H2C3 zf-RING_UBOX Beta-prop_IFT122_1st zf-RING_11 zf-ANAPC11 zf_RING_Vps8_fungal Beta-prop_VPS8 zf-C3HC4_3 CC_Bre1 zf-RING-like
Other DBs
NCBI-GeneID: 128918599
NCBI-ProteinID: XP_054078995
LinkDB
Position
17:complement(121421..130603)
AA seq 929 aa
MAAYLQWRRFVFFDRETVKEPPGPDGAGGKPFALPPGIAVCDSGRGSLVFGDMEGQIWFL
PRSLQLSSFQAYKLRVTHLYQLKQHSILVSVGEDEEGINPLVKVWNLEKRDGGNPLCTRI
FPAIPGNKPTVVSCLTVHENLNFMAIGFADGSVVLTKGDITRDRHSKTQILHEGSYPVTG
LAFRQSGKTTHLFVVTTENIQSYMLSVKDYPHLELDTHGCGLRCSSLSDPSQDLQFIVAG
NECVYLYQPDERGPCFAFEGQKLIVHWYRGYLIIVSKDQKTSPKSEFAGNEAQNSDRQVL
NIYDLCNKFIAYSSIFDDIVDVLAEWGSLYVLTRDGKIHVLQEKDTQTKLEMLFRKNLFE
MAINLAKSHHLDSDGLSEIFRQYGDHLYNKGNHDGAIQQYIRTIGKLEPSYVIRKFLDAQ
RIHNLTAYLQTLHLQSLANADHTTLLLNCYTKLKDSSKLEEFIKTSESEVHFDVETAIKV
LRQAGYYSHAVYLAEKHAHHEWYLKIQLEDIKNYQEALRYIGKLPFDQAESNMKRYGKIL
MHHVPNETTELLKILCTDYRPSGDNEGPGMLEGKKANSEEFIPVFANNSRELKAFLEHMT
EVQADSPQGVYDTLLELRLQNWAHEQDEQVKEKLHNEALTLLKSGRFKTVFDKALVLCQM
HNFKDGVLYLYEQGKLFQQIMHYHMQNEQYKKVIEVCELYGDQEACLWEQALGYFARKEE
DCKEYIAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIKDYLVNKLQKQSRQIEQDEQR
IQKYREETTRIRREIEELKASPKIFQKTKCSICTSALELPSVHFLCGHSFHQHCFESYSD
SDSECPTCMPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDGFSVVADYFGRGVFNKLTL
ITDLPSGKAAATIEAGLQRELLIHTKRST
NT seq 2790 nt   +upstreamnt  +downstreamnt
atggccgcctacctgcagtggcgccgcttcgtcttcttcgacagagagacggtgaaggag
ccgccggggccggatggggctggcgggaagcccttcgccctgcccccgggcatcgccgtc
tgcgactcgggccggggcagcctcgtcttcggggatatggaagggcagatctggtttctg
cctcgctccctccagctcagcagtttccaagcttacaagctgcgggtaacgcacctgtac
cagctgaagcagcacagtatcctggtttctgttggggaggatgaggagggcattaacccc
ttggttaaagtctggaacctggagaaacgagatggcggcaatcccctttgcacgcgaatt
tttccagcgataccaggtaataagcctacagttgtatcctgcctcaccgtccacgagaat
cttaatttcatggctatcggatttgcggatgggagcgttgtccttacaaaaggagacatc
actcgggaccggcacagtaagacccagatcctacatgaaggcagttacccggttaccggc
cttgctttccgacagtctggcaaaacaacacatctctttgtggtgaccacagagaacatc
cagtcttatatgctttcagtgaaagactatcctcacctggagctggacactcacggctgt
ggattgcgctgttcgtctctcagcgacccctcccaggatctccagttcatcgtggcaggg
aacgaatgcgtgtacctttatcagccagacgaacgtggcccctgctttgccttcgaggga
caaaagctgattgtccactggtatcgggggtacctcatcattgtctccaaggaccaaaag
acatctccaaagtcagagtttgctgggaacgaggcacagaattcggacagacaagtcctg
aatatctatgacttgtgcaacaaattcattgcatacagctcgatcttcgatgacatagtg
gatgtcttggcagagtggggttctctgtatgtactgaccagagatgggaagattcacgtt
ctgcaggagaaggatacacaaaccaaactcgagatgctgttcagaaagaacttgtttgaa
atggccattaacctggccaagagccaccacttggacagcgatggcttgtcagagattttc
cggcagtatggcgatcatctgtataacaaggggaaccacgatggggccatccagcagtat
atccgaactatagggaagctggaaccgtcttacgttattcggaaattcctggatgctcag
cgtatccacaacctcaccgcttatctgcagacgctgcacctgcagtccctggccaatgcg
gaccacactacgcttctgctgaactgctataccaaactcaaagacagctccaaactggag
gagttcattaagacgagtgagagcgaggtccactttgatgtggaaacggcgatcaaggtg
cttcgtcaagcgggttactactcccacgctgtgtacctggcggagaagcacgcgcatcac
gaatggtacctcaaaatccagctagaggacatcaagaactaccaagaggctttgcgctac
attggaaaactgccttttgatcaagcagagagtaacatgaagcggtatggtaaaatcctg
atgcaccatgtccctaacgagaccacagaattgctgaagattctttgcactgattaccgg
ccatcgggagacaatgaaggccctgggatgctggaaggtaaaaaggctaattcagaggag
ttcattccagtctttgcaaacaactcccgggaactgaaggcttttctggagcacatgact
gaggtgcaggctgactctccgcagggtgtctatgacactttactggaacttcggctccag
aactgggcacatgaacaagatgagcaggtcaaggagaagctgcacaatgaagccctcacc
ctcctgaagagcggaaggttcaaaacagtctttgataaggccttggtcttatgtcagatg
cacaatttcaaggatggtgtcctctacctctacgagcagggcaaacttttccaacagatt
atgcactaccacatgcagaatgagcagtacaagaaggtgattgaggtgtgtgagttgtat
ggagaccaagaggcttgtctctgggaacaggctcttggctactttgcgcggaaggaggag
gactgcaaagagtatattgctgcggtgctgaaacacatcgagaacaagaatcttatgcct
ccactgcttgttgtgcagacgctggctcataactccacagccacactgtctgtgattaag
gattatcttgtcaacaagctgcagaagcagagccgccagatagagcaggatgagcagaga
attcaaaaataccgagaagaaactacaaggatccgccgggagatcgaagagctgaaagca
agtcccaagatctttcagaagaccaagtgtagcatttgcaccagtgccctggagctgcct
tcagtccactttctgtgcggtcactcctttcaccagcactgctttgaaagttactctgac
agcgattcagaatgtcctacttgcatgccagaaaatcgcaaagtgatggacatgatccga
gcccaggagcagaagagagatctgcacgaccagtttcagcatcagctcaagtgttccaac
gatggcttctccgttgttgccgactacttcggtcgaggcgtcttcaataagctcaccctc
atcacggacctgccctcgggaaaggcggccgccaccatcgaggcgggcctgcagcgggag
ctgctcatccacaccaagcgcagcacctga

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