Rissa tridactyla (black-legged kittiwake): 128918986
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Entry
128918986 CDS
T09443
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128918986 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtd03041
]
128918986 (SNRNP40)
Spliceosome [BR:
rtd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128918986 (SNRNP40)
Complex C
U5 SnRNP specific factors
128918986 (SNRNP40)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Cytochrom_D1
WDR54
WD_LRWD1
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
128918986
NCBI-ProteinID:
XP_054079880
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Position
18:complement(6598948..6609825)
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AA seq
385 aa
AA seq
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MIEQHKRKVPGGGPGPAPAPTPTPTPTPVAAPGAAPAPDLPLVPTAAKRPRHDLPGAPGA
GGGAGQPPPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDRLILL
WNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTS
FVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGG
IDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKER
CVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNE
LAFHPEEPIILSASSDKRLYMGEIQ
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagcacaagcggaaggtcccgggcggcggccccggccccgcgcccgcgccc
acccccacccctacccctacccctgtcgccgccccgggggccgctcccgcccccgacctc
ccgctcgtccccacagcggccaaacggccccgccatgacctgcccggggcgccgggcgcc
ggcggcggcgcggggcaacccccccccggggccctgctgcaggcgggcccaccgcgctgc
tcctccctgcaggcccccatcatgctgctgtcagggcatgaaggggaggtgtattgctgc
aagttccaccccaacggcaacaccctcgcctccgccggcttcgacaggctcatcttgctg
tggaatgtctacggggactgcgataactacgccaccctgaagggacacagcggggcggtt
atggagctgcactataacacggatggcagcatgctcttctcagcatccacagacaaaacc
gtggccgtgtgggatagtgagactggagagagagtgaagagactgaagggccatacatca
ttcgttaactcctgttacccagcaaggagaggaccccagcttgtctgtacaggcagcgat
gatgggacagtgaagctgtgggatatcaggaaaaaagctgccgtccagacgtttcagaac
acgtaccaggtcttggctgtgactttcaatgacaccagtgatcagatcatatctggaggc
atcgacaacgacattaaggtgtgggaccttcgccagaacaagctcacttacacgatgaga
ggacacgcggattcggtgacaggcctcagtctcagttcggaaggctcctacctgctctcc
aacgcaatggacaacacagttcgcatctgggatgtgcgaccgtttgcccctaaagagaga
tgtgtaaagattttccaggggaacgtacataattttgaaaagaatctcctgaggtgctct
tggtccccggatgggagtaaaatcgcagggggatccgccgacaggtttgtctacgtgtgg
gacaccacatccagaaggattttgtacaagctgccaggtcacgccgggtcggtgaacgaa
ttggctttccatccggaggaacccatcatactctccgcatccagcgacaaaagactgtat
atgggggagatccagtga
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