Rissa tridactyla (black-legged kittiwake): 128919102
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Entry
128919102 CDS
T09443
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04510
Focal adhesion
rtd04512
ECM-receptor interaction
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128919102 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128919102 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128919102 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128919102 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128919102 (COL4A2)
Exosome [BR:
rtd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128919102 (COL4A2)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128919102 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128919102
NCBI-ProteinID:
XP_054080063
LinkDB
All DBs
Position
1:66808219..66955821
Genome browser
AA seq
1772 aa
AA seq
DB search
MGGGSPLSSPRAGTLGGRNLARSPPSAVPPPPPPRRGGGRPAGGSPEPEPPAGEGAKMDI
SQLPSARTFICQDLGVLLILMEVVLSAVKVDAGGKTYTGPCGGRDCSGGCQCFPEKGSRG
QPGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGYPGISGPKGEVGQRGVTGFPGADGIPG
HPGQPGSRGKPGHDGCNGTVGDPGDSGTPGLAGFPGTIGVQGPKGQKGEPYILPPDIASR
YRGEPGDPGFIGFPGPPGTLGIQGPVGPRGEQGRPGPPGPPGPQGPQGNRGLGFYGEKGE
QGPPGPPGPPGLPTRELMGVPSDKHKGERGERGQKGEAGAPGVLLYAPEKGEEGVIGFPG
QRGLPGINGFPGLSGERGFPGFDGPPGGYGPRGSKGEQGEIGPPGPVSYFPSRIPRKGAR
GDPGFPGASGLQGDPGEQGDRGLPGLPGFSDADGDKPGLPGEMGPKGEKGELGSPAYQMG
PPGFPGKHGTPGLRGPPGPAGAPGSLFGLKGQEGTPGRLGLQGFPGPRGQKGPKGEEGDC
STCLVGEELRRGSTGPPGPPGFPGTPGQPGRKGEPGDQGPHGIPGYPGAKGFSGQVGFPG
PKGEKGDSLHITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGQPGLPGDGIRGFPGD
PGYPGELGPKGFPGEAGLPGEGFPGPKGYRGPPGDHGQDGNPGPPGLPGLPGEPGQPDCG
QVIEDFSRGDGTEPIWSGAGCVRPPKGSQGKPGLPGATGAKGARGFPGDPGPTGYPGLNG
TRGDPGREGFPGPPGFTGPRGDRGPNGLPGLQGHPGRTGKSGAPGAAGQKGFPGDVLGAA
AGSRGDAGFPGFPGLKGVPGDQGIPGIRGADGNPGLPGPKGDPGPQGLPGLMGLPGTPGT
RGFPGPPGNPGPDGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGDKGETGYPGLQGI
PGVIGPPGISGMDGFPGDKGSRGSPGIDGFKGMTGLKGRPGIKGVRGEFGSLGAQGDKGA
QGARGFKGDRGDQGPPGEPPKIKPSMMMEVKGEKGDVGERGTKGFFGLKGSKGMPGIPGK
TGTPGSPGHPSYVAGVKGDIGAKGLTGLKGYPGPAGSPGIRGFPGSTGGRGEKGIPGISG
RFGTPGSHGEIGEQGDTINLPGMPGLKGEVGVPGLTGTRGGAGQKGEGGDPGIPGIEGLK
GTQGVPGSVGQEGLPGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGLPGLRGISGLH
GLPGTKGLPGSPGPDGYGSAGFPGAVGDKGEAGEPSRVEGSRGPPGQKGDRGVPGVPGPF
GIPGQEGFPGPPGISNISGYPGDIGSPGLDGVPGYPGLQGQPGTPAPPGSKGESGQPGVS
GQIGPKGSRGDPGLAGRPGVPGYPGPKGRKGEQGVIGFMGTIGFPGDLGPIGPKGDRGVT
GFQGPPGSPGLPPLPPRLVAEQGSPGPRGNIGPQGSPGDMGPQGPPGDPGFRGSPGEPGL
QGRGGIPAPPGSRGEQGGTGFQGPVGFEGQPGRPGSPGLPGMPGRSVSMGYLLVKHSQSD
QEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICYYAS
RNDKSYWLSTTAPLPMMPVAEDDIKPYISRCSVCEAPAVAIAVHSQEASIPHCPEGWRSL
WIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTI
DQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5319 nt
NT seq
+upstream
nt +downstream
nt
atgggcggtggcagccccctctcctccccccgggcggggaccctgggagggcgcaacctc
gcccgctccccgccgtccgcagttcctcctcctcctcctccccgccgcggggggggccgt
ccggcgggaggaagccctgagcccgagcccccggccggggaaggagcaaaaatggacatc
tcgcagcttcccagtgcgcgtacttttatttgtcaggatctgggggttctactgatcctg
atggaagttgtgctgtcagccgtcaaagtggatgctggtggaaagacttacacaggacca
tgtggaggaagagactgcagtggaggatgtcagtgtttccctgaaaaaggaagccgtggc
cagccaggacttcttggatcacaggggttcactggaccaccaggattgatggggatccca
ggagtgcaaggtcccaaaggtcacaaaggtgaaagaggatatccaggaataagtggaccc
aaaggagaagtggggcaaagaggagtcactggattccccggggcagatggcattcctggt
catccagggcagccaggatcaagggggaaaccgggtcatgatggctgtaacgggacagta
ggtgaccctggtgactcgggaactcctggactcgctggtttccctggtaccattggagtc
caggggccaaagggccagaagggggagccttatatactgccaccggacatcgcaagccga
tacaggggggaacctggggatccagggttcattggctttcctggacctccgggtacgctg
ggtattcaaggacctgttggtccaagaggagagcaaggaagaccaggaccaccagggccc
ccaggaccacaagggccacaaggcaacaggggccttggcttctatggagaaaaaggtgaa
cagggccccccaggtcctccaggtccacctgggcttcctacaagagaactgatgggtgtc
ccctctgacaaacacaagggtgaaagaggagaacgtggacaaaaaggggaggctggagct
ccaggtgtacttctctacgctcctgaaaaaggtgaagaaggggtaataggcttcccagga
caaaggggactgcctggcatcaatggttttccaggactcagtggagaaagaggttttcca
ggatttgatggtccaccaggtggctatggtcctaggggaagcaagggagagcaaggcgag
atcggtcctccaggaccagtttcctattttccttcccgcatcccaaggaaaggtgcaaga
ggtgatccaggctttccaggtgcgtctggacttcagggagacccaggagagcagggagat
cgtgggctgcctggtcttcccggattctctgatgcggatggggataagccaggcttacca
ggagaaatgggaccaaaaggtgaaaaaggtgaattaggatctcccgcttatcagatgggc
ccgcctgggttcccgggtaagcacggcacaccaggactccgtggtccacctggtcccgct
ggagcccctggttctctctttggattaaaaggacaggaggggacaccaggtagacttggc
ttgcaaggtttccctgggccaagaggacaaaaaggacctaaaggtgaagaaggggattgc
agtacatgccttgtgggtgaagagctcagaaggggctctactggcccccctggccctccg
ggctttccaggaacccctggccagcctgggaggaaaggagaacctggtgatcaaggacca
catggtattcctggctaccctggagcaaaaggattttcgggtcaagttggttttcctgga
ccaaaaggagaaaagggagattctttacacataactactaaaggcaccaaaggaatccga
ggagatcctgggctgcctggtatcagaggtgaagatggtttcccaggtagagatggatta
gatggcttaccaggacagccaggccttccaggtgatggtatcagaggtttccccggcgat
cctggttacccaggtgaattgggcccaaagggctttccaggagaagcgggcctgccgggt
gaaggatttcctggtccaaaagggtaccggggtcctccaggtgaccatggacaagatgga
aacccagggcctccaggtctgcccggtctgccaggagagcctggccaaccagactgtggg
caggtcattgaagacttttctagaggagatggaaccgagccgatatggtcaggcgcaggc
tgtgtgaggccaccaaagggatcccaaggcaagccaggactgccaggagccacaggtgca
aaaggtgcaagaggattcccaggtgatccaggtccaacgggatacccggggctaaatggt
acacgaggtgatccaggtcgggaaggattcccaggtcctccaggttttactgggcccaga
ggagacaggggcccaaatggtctacctggactgcagggacacccaggccgtacaggaaaa
tccggtgctccgggagcagcaggacagaagggctttcctggtgatgttttaggagcagca
gcaggttcccgaggggatgctgggttccccggcttcccagggttgaaaggcgtgccagga
gatcaaggaataccgggaattagaggagcggatggtaacccaggtttgccaggacccaaa
ggagatccagggccgcaaggtcttcctggtttgatgggattgccgggaacaccaggaaca
cgtggattcccagggcctccaggaaatcctgggccagatggtgggcctggctctcaagga
cctctcggtccacctggtgctaggggagaagatggtgagcaaggtttccctggccccgtg
ggcctcaaaggtctgtctggtgacaaaggtgaaacaggttacccgggattacaagggata
cctggcgtgattggtccccctggcataagcggaatggatggctttcccggagataaaggc
tcaagaggttcacctggcattgatggtttcaaagggatgactggcctaaaaggaagacca
ggcatcaagggagtcagaggagaatttggctcgttgggggctcagggtgacaaaggcgca
cagggcgcacgcggctttaaaggtgaccgtggggatcaaggccccccgggagagccccca
aagatcaagcccagcatgatgatggaagttaaaggtgaaaaaggagatgttggagaaagg
ggcacgaagggattctttggcttaaaaggtagcaagggaatgccaggcatccctggaaag
acaggaacgccagggtcccctgggcatcccagctacgtggccggcgtgaaaggggacatc
ggcgcaaaagggctgacaggtctgaaagggtatcctggtccagccggctctcctggcatc
agaggcttccctggcagcacaggaggcaggggagaaaagggtattccaggaatttcgggc
cgttttggtactcctggctcacatggtgaaataggtgagcagggagatactataaactta
ccaggaatgccaggccttaaaggggaagtcggtgtgccaggcttaacaggcacaagagga
ggcgcaggacaaaaaggcgaaggcggcgatcctggtatccctggcattgagggcctcaag
ggcacacagggtgtccctggctctgtgggacaggaaggtttgccaggactggtcggcccc
ccagggcagcaaggaagccccgggacgcccggatttcaaggtgaaaagggaactcccggc
tggcctggcttaccaggacaagcaggcttgcctggcttaagaggaatcagtggactgcat
ggtttaccgggcactaagggcttaccaggatcaccaggcccagatggctacggctctgca
ggcttcccaggtgcagtgggtgacaaaggggaagcgggagagccgagcagagtggaaggc
agccgaggaccaccaggccagaaaggagacagaggtgttccaggagttccaggacctttt
ggcattcctgggcaggaaggatttccagggcctcctgggatttcaaatatctcaggatat
cctggtgatataggctccccaggtctagacggagtgccaggctatccaggactacagggg
cagcctggaacaccggctccaccaggaagcaaaggagaaagtggacaaccaggtgtgagt
ggacaaattggcccaaaaggaagcagaggtgatcctggattagcagggagacctggcgtt
cccgggtaccctggaccaaaaggtcggaagggtgaacaaggtgtcatcggctttatgggc
accataggatttccaggtgatttgggacccatcggacccaagggcgatagaggagtgact
ggctttcagggccctccaggctctcctgggttgccccctcttcctccaaggctggttgct
gagcaaggctcaccaggtccccgtgggaatataggacctcaaggaagcccaggagatatg
ggacctcagggtccaccaggtgatccaggtttcagaggctcacctggagagccaggactc
caaggcaggggtggcattccagctcctcccggctccagaggtgaacaaggaggaacaggg
tttcagggtccggtgggatttgaaggtcagccaggccgccctggtagccccgggcttcca
ggcatgccgggtcgcagcgttagcatgggctacctgctggtgaagcacagccagtccgat
caagagccaatgtgcccagttggcatgaacaaactgtggagtggatacagcctactgtat
tttgaaggacaagagaaagcacacaaccaggatctagggctggccggctcatgtttggct
cgttttagtactatgccattcctctactgtaaccctggggatatttgttattatgcaagt
cgaaatgataaatcctactggctctcaactacagcacctcttccaatgatgcctgtggca
gaagacgacattaagccatatatcagccgctgctcagtttgtgaggccccagctgtggca
attgctgtccatagccaagaagcttctattcctcactgccctgaaggctggcgcagtttg
tggatcggatattccttccttatgcacactgctgctggtgatgaaggcggaggacagtcg
ctggtttctcccgggagctgcctggaagatttcagagcaactcccttcatcgaatgcaac
ggcgcacgtggaacctgtcactactttgcaaataaatacagcttctggctcactacgatc
gaccagcccttccaaagcaagccctcagcagatacgctcaaggcaggactcatccgaagc
catatcagcagatgtcaagtctgtatgaaaaatttatag
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