Rissa tridactyla (black-legged kittiwake): 128919119
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Entry
128919119 CDS
T09443
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128919119 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtd03041
]
128919119 (DDX42)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128919119 (DDX42)
Spliceosome [BR:
rtd03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128919119 (DDX42)
Complex B
128919119 (DDX42)
Complex C
U2 SnRNP specific factors
128919119 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
128919119
NCBI-ProteinID:
XP_054080085
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All DBs
Position
19:4807438..4826204
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AA seq
952 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAAAKGVPGFTSTGNLSSVPT
FPSVGVQGFNNTNASTNNREGIGSSSTGVAAAGGGGGGGSGGSGGGGGGGGGIVRERYDN
RNSRHNEIPRRGEGGGRYNDVQRHGEGGGRHSDAYRHGEGRHGDNHRHSESRHFADVGSG
NRNNGDSRNSNEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctgggactaagagaggctttgggtttggtggatttgcc
ataacacctgggaaaaaagaggagcctaagctctctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcgaaatcaggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgttgaattgccgtacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagacaaagacaaggaa
aaaaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgacagtgatgggaatccaattgcgccgtccaagaaaatcattgatcctctt
ccacctattgaccattcagagatcgaatacccaccgtttgagaaaaatttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctaaat
ctccgggtctccggtgccgctcctccaaggcctggcagtagttttgcgcattttgggttt
gatgagcaacttatgcatcaaattaggaaatctgagtatacccagcccactcctatacag
tgtcagggtgttccagttgcactaagtggcagagatatgattgggatagctaagactgga
agcggaaaaacagcagccttcatctggccgatgttgatccacatcatggatcaaaaggag
cttgaaccgggggatggtcccattgcagtgatcgtatgcccaaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcatataatctacgctctgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatagtt
gtctgcacaccaggtcgtttaattgatcatgtgaaaaagaaagctacaaaccttcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccact
ttccgtaagaagattgagaaattggcccgagacattctgatcgacccaattcgagttgtg
cagggagacattggggaggcaaatgaagatgttactcaaattgtggagattttcccctct
ggccctagcaaatggaactggctgactcgacgcctcgtggagttcacatcttctgggagc
gttctcctctttgtcaccaagaaggcaaatgcagaagagctggccaataatcttaagcag
gaggatcataatctggggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaaggggatcccaatactggtagctactgatgtggcagctcgt
gggttagatattccttccattaagactgtcatcaattacgatgtggctcgggacatagat
acgcacacccatagaattggtcgtactggcagagcaggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaactttgctggtgatcttgtcagaaatctggaaggtgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaatccgtggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatac
cgtgaacgtcctggtctgggatcagaaaattctgaccgtggaaacaacaacagtgtgatg
agtaactatgaggcatacaagccatccaccggggcaatgggagacagacttacagcaatg
aaagcagcttttcagtcccagtataagagccactttgttgccgcaagcttaaataatcaa
aagactggtagctccgctgctggtgctagtggctggaccagcgctgggagcttgaactca
gtaccgacgagttcagcacagcaaaatgctgcaaatcctgacagcccgattgcagccacc
gcagcagcaaagggtgttccaggtttcaccagcacggggaatttgagtagcgttcccact
tttccaagcgtcggagtacagggcttcaacaacaccaatgccagcaccaacaatcgagaa
ggcatcggcagcagcagcaccggcgttgccgccgctggcggcggtggtggcggtggcagc
ggcggcagcggtggtggtggtggtggcggcggtggcattgtcagagaacgctacgacaac
cggaacagtcgccacaacgagatcccgcgccgcggagagggtggtggtcgctacaatgat
gtgcaacgccatggagaaggaggcggtcgccacagtgacgcttaccgccacggagagggc
cgacacggcgacaaccatcgccacagtgaaagccggcacttcgctgatgtgggcagtggc
aatcgcaataatggtgatagcaggaatagcaacgaaggtaggaacaacgagaacaggaat
ggtgagaacaggaaggatgccaacagccgagacaacaagacagatggttttgctgtccca
gagcccccaaaacgtaagaagagccggtgggacagttaa
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