Rissa tridactyla (black-legged kittiwake): 128919120
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Entry
128919120 CDS
T09443
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04382
Cornified envelope formation
rtd04510
Focal adhesion
rtd04512
ECM-receptor interaction
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128919120 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128919120 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128919120 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128919120 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128919120 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128919120 (COL4A1)
Exosome [BR:
rtd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128919120 (COL4A1)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128919120 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128919120
NCBI-ProteinID:
XP_054080092
LinkDB
All DBs
Position
1:complement(66680092..66808788)
Genome browser
AA seq
1669 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGDKGFPGQPGLPGPPGTQ
GFQGPMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPSPHMK
EKGSEIIRGEKGEPGEKGEQGAPGLPGSGFKGEKGEPGKPGPRGKPGKDGEPGPKGEPGL
PGGFGIPGRPGEPGTKGDKGERGFPGPPGRVIDPGPVDTFGEKGEPGASGLPGLKGQKGE
KGFPGIQGIPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFPLPGPPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGTPGLPGRDGFPGEMGEKGDKGESCALCDKVGPPGLPG
PQGPPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFTYDSILK
GEKGDPGFPGQPGIPGREGRPGKDGLPGPQGPKGTAGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGVGAAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFPGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGIGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGSQGPPGAPGLGPPGSPGPAGQPGPQGPPGFPGIKGERGFPGLPGLDMPG
PKGEKGIQGQPGVPGSVGLPGLPGPQGAVGLKGSAGAKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSQGLKGVVGPQGDPGVKGDKGEAGLPGKPGTMDNMDMVSLKGQKGDQGEKGDHG
ATGEKGLRGEYGEPGIPGKDGEPGTPGQPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGIPGRGLPGFPGAKGDKGAKGDVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGAPG
LKGAKGEQGSNGWPGTPGLPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKG
SPGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAP
SVAHGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctaggcttcgggctgctgctgagcgccgagctcagcgccgtctctgcc
gcgggttgttccggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagcatcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacgaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactgggagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcctagtttg
ctaaaaggtgacaaaggctttcctggccaacctggactacctggtccacctggaactcaa
ggttttcagggaccaatggggccacaagggcctccaggagaaccaggtcccccagggcca
ccaggactcccaggcgagaagggctacatgggcttaggctttcagggtcccaaaggtgaa
aagggagaacaaggcgtaaggggccccccaggccctccaggaccatcaccgcatatgaag
gaaaaagggagtgaaatcataaggggagaaaagggtgaaccaggtgaaaagggtgaacag
ggggccccaggattgccaggttcaggtttcaaaggagaaaagggtgaaccagggaagccc
ggtccacgtggaaagcctggaaaagatggtgaaccaggaccaaaaggagaacccggtttg
cctggtggatttgggattccaggacgacctggggagcctggtacgaagggtgacaaaggt
gaacgaggttttccaggacctccaggaagagttatagatcctggaccagtagataccttt
ggtgaaaaaggagagcctggagcttccggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggtttccctggtatacaaggaatcccaggacctccaggtcgaccacttccagatagg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccggga
ttccctttacctggacccccaggaagagatggtttcccaggtcccccggggttgcctggc
cctccaggtcctccaggcaaaacagatggaattgatcaatgccagcagggagaacctggt
gcaccaggtactcctggacttccaggaagagatggatttcccggagagatgggagagaaa
ggtgacaaaggtgaatcctgtgccttatgtgataaagtaggacctcctggacttccagga
ccacaagggccaccaggtccagcaggttttccaggacaatcgggtttcaagggtgacaga
ggcttacctggactcgatggccttccgggggtacctggcccccccggcactccaggactt
atgggcagccccggggcaaaaggagaaccaggagattttacttatgattctatcctgaaa
ggggaaaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaaga
ccaggaaaagatggattgccaggtccccaaggtcctaaaggaacagcgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtacgtggggaaaga
ggttttcctggccctcctggggtaggtgctgcagggttacctggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggagcaaaaggtgaagcaggacga
actgtaccactccctggacctcctggggcagatggccttcctgggccacctgggttccct
ggaccccaaggtgacaaagggaatcccgggcttccaggtagacctggcctgccaggagaa
aagggtgctgttgggcagccaggtatagggttccctggacctccaggacccaaaggtttc
ccaggtcagcctggctcacctggtctgccggggactccaggaacccctggcctggatggt
ttgccaggtgtaccaggtttacaaggtcaaaaaggtgaacctggtataggtctccctggc
cctaagggcttgccaggccctccaggcccagctggcatccctggagaaaagggaaatcca
ggattgcctggtttacgcggcgagcaaggctttccgggcatacctggacagcaaggattc
agaggcgaccccggcctcccaggactgcaaggctcgcagggccctccgggcgcaccgggg
ctgggtccgccgggatcgccaggacctgctgggcagccaggacctcagggaccaccagga
tttcctggaataaaaggagaaaggggcttccctggtcttccaggtctagatatgccagga
ccaaaaggggaaaaaggtatccagggccagcccggagtaccagggtctgtggggttaccc
ggcctgccgggtcctcagggggccgttggactgaaaggatcagcaggagccaaaggagaa
atgggagttatgggaactcctggattgccaggaactcctggaccagttggagatcgaggg
ttgcctggtgaaaaaggtagccaaggtctcaaaggtgtagttggaccacagggtgatcct
ggtgtcaaaggagataaaggtgaagctggtctcccaggaaagcctggaacgatggacaac
atggacatggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaaggcttacgtggggaatatggagaaccaggaattccagggaaagat
ggtgaacctggtactccaggacagccaggaccaaaaggtgatcagggtcccccagggtac
ccaggggatccaggaattccaggacaaaaaggatcggttggtgaaatgggtttgccagga
acacctggagaaaagggtctgccgggagtaccaggttcaccaggtacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
gggtctcctggtgagaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggtagtgcagggattcctggaatgccgggtgcccctggtcccaaagga
tcccctggcatggcaggattcccaggcaaccctggccgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtggcattccaggcttaaaaggagaaccaggtgaacctggtgtt
ccgggtcctgctggctccattggacagaagggtgaaccgggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtattccaggtagaggacttccaggatttcccggt
gcaaagggagataaaggtgcaaaaggtgatgtgggatttccaggatccccaggaagtccg
gggatcccaggtctgaaaggagaaccaggatatgctggtccaccaggccctaagggtagc
caaggtcttcctggactaccaggaagtgcaattgagggccctaaaggagacagaggaccc
caaggccaacctggccttccaggattaccaggtccaacagggccaccaggagccccaggt
ctgaaaggggccaaaggagagcaggggagcaatggctggcctgggactcctgggcttccg
ggagtcaaaggtgatccaggtttccagggactgccaggtagtcctggtttaccaggagat
attggtcaaaagggtgatctgggacctccaggtgttccaggtgttccaggtccaaaagga
tctcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggtccaccaggcccaccaggtgcttttcaacttgttaaaggggatcctggc
ttacctggccctgtaggaccagttggtctcaaaggattcccaggacttccaggtcccaaa
ggacagcaaggggtgacaggaccttcgggtgtacctggaccacctggtagtccagggttt
gatggtaaacccgggcaaaaaggagaagttggtccatatggtcccccagggcccagagga
ttccctggtccacctggccctgaaggtttgcctggggctatgggcccaccaggtgcacca
tctgttgctcatggcttccttgttaccagacacagtcaaaccactgaagaaccatcatgt
ccatttggaacaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacggcaggaagctgtcttcgtaaattcagtacaatg
cctttcttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactattcc
tactggctgtccactcctgaacccatgccaatgaatatggctcctattactggtgataat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaattcagataccaccatgtcctgagggctggagttcactttggattggt
tactcctttgtcatgcacaccagtgctggtgcagagggctctggccaggccctggcgtct
cctggttcctgcctagaagagtttcgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattacgcaaatgcttacagcttctggcttgccactatagagaggaatgag
atgttcaagaaaccgactccctcaactttgaaagcaggggatctgcgctcaaatgttagc
cgttgtcaagtctgtatgagaaaaacataa
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