Rissa tridactyla (black-legged kittiwake): 128919178
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Entry
128919178 CDS
T09443
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128919178 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtd03041
]
128919178 (DHX8)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128919178 (DHX8)
Spliceosome [BR:
rtd03041
]
Complex C
Other components
Step II factors
128919178 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
PRP38_assoc
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
nSTAND_NTPase5
PhoH
TsaE
Sigma54_activ_2
OB_RRP5_4th
Transformer
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128919178
NCBI-ProteinID:
XP_054080230
LinkDB
All DBs
Position
19:complement(5296446..5312439)
Genome browser
AA seq
1192 aa
AA seq
DB search
MADLATLEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKNTTFDTFKAVLLK
NGAEFTDSLISNLLRLIQTMRPPPKPSTSKETVVKPKSEKEKLKELFPALCRPDNPNIRN
MLDEDDVKVAADALKELEALMPSANRHGKQRNSDHRAKKKRRSRSRSRDGRRRHRSRSRS
RSRTRDRNRGKSRYRSRSRSRSPSRDRRDREKYVEKSNERWRDKHVDRPPPEEPSIGDIY
NGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG
SKTSLSMKDVDQNTGEDLNPNRRRNLIGETNEETSMRNPDRPSHLSLVNAPEVEDDSLER
KRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPF
LRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNTH
WVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIF
RLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAK
RVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAH
ERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILY
TKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELI
ILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSK
TGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLAST
VLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPM
LCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAV
YNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAIC
SGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTI
DPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctggcgaccctggaggagctcgccaagctcgagtacttgtcgctggtctcc
aaggtgtgcaccgagctcgataaccacctgggcatcaacgacaaggacctagccgagttt
gtgataagtcttgctgagaaaaataccacatttgatacgtttaaagcagttcttctaaag
aatggtgccgagttcactgattcccttattagtaatttgctacgtctcatacagacgatg
cggcctccaccaaaaccatctacgagcaaagagacagttgtcaaacccaaatcggagaag
gaaaagttgaaggaattgtttccagccctttgcaggccagacaatcccaacatcaggaat
atgttggatgaagatgatgtgaaagtggcggctgatgcacttaaagaacttgaagctcta
atgcctagtgcaaaccggcacggcaagcaaaggaacagcgaccaccgggcaaagaaaaag
aggaggagccgaagtcgtagcagggacgggagacgaaggcacagatctcgctctaggtct
cgttctaggactcgggataggaacaggggaaaatccagataccggtcaaggagcagaagt
cggagtcccagtagggaccgtagggatcgagagaagtacgtggagaagagcaacgagaga
tggagagacaaacacgtagaccgtccaccccctgaggagccttccatcggagacatttac
aatggcaaagtcacgagtataatgcaatttggatgctttgtgcagctggaaggactaagg
aagcgttgggagggcttggtccacatctcagagcttcgaagagaaggacgggttgccaat
gttgccgatgtcgtgagcaaaggacaaagagtaaaagtcaaagtgttatcctttactgga
tccaaaaccagcctgagcatgaaggacgttgatcaaaacactggggaagatttgaaccca
aaccggaggagaaacctgattggagaaactaatgaagaaacctctatgagaaacccagac
agacccagtcacctgtccctggtgaacgcaccggaggtggaggatgatagccttgaacga
aaacgccttacccgaatttcagacccagaaaaatgggaaataaaacagatgattgcagct
aatgtgctttccaaggaagagtttcctgactttgatgaggagactgggattcttcctaaa
gttgatgatgaagaagatgaggaccttgagattgagttagttgaagaagagccaccgttc
cttcgaggtcatactaaacagagcatggatatgagtcccatcaaaatagtaaagaatccg
gatggttccttgtcccaggctgcaatgatgcagagtgctttagctaaagaaagacgagaa
cttaaacaagcccagagagaagcagagatggattctatccccatgggactgaacacacac
tgggtagatcctctccctgatgtggacggaagacaaattgctgcaaacatgcgaggtatt
gggatgatgccaaatgatatcccagagtggaagaaacatgcatttggtggcaacaaagct
tcttatggtaagaagacccagctttccatcattgagcagagagagagtctccctatcttc
agactgaaagagcagctgatacaagctgtgcatgacaaccagattctgattgttattgga
gagacgggatctgggaaaacgacacagattacccaatacctggctgaggcaggttataca
tcaagaggaaagattggatgtactcagcctcgcagagtggctgcaatgtctgttgcgaag
agggtgtcagaggaatttggttgctgcttgggacaagaggtcggctacaccattcgattt
gaagattgcactagccctgaaaccgttatcaaatacatgacagatggtatgttattgagg
gagtgcttgatagatccggatctgactcagtatgccattatcatgctggatgaagcccat
gagagaaccatacatacagacgtgctctttggactactgaaaaagacggtgcagaagcgg
caggatatgaagctgatagtgacgtcagcaacgctggatgctgtgaaattctcacagtat
ttctacgaagcaccaatcttcacaattcctggcagaacatacccagtagaaatcctgtac
accaaagagccagagacagattatttggatgccagtctgattacagtaatgcagatccac
ttaacagagccaccaggtgacattttggtgtttctaactggtcaggaagagattgacaca
gcctgtgaaatcctctatgagaggatgaaatctctaggacctgatgttccagagttaatt
atcctaccggtgtattcggctttacccagtgaaatgcaaaccaggatctttgacccagcc
cccccaggaagcagaaaggttgtcatcgccactaacattgctgagacatctttgactatt
gatggaatatattacgtcgtcgatcctggctttgtgaagcagaaagtttataactccaag
actggaattgaccagctggttgttacaccaatctcacaggctcaagcaaagcagcgagca
ggaagggctgggagaacaggaccaggaaaatgctataggttatacacagagcgcgcttat
cgagatgaaatgctgaccaccaacgtgcctgaaatccagagaacaaatctggccagtact
gtactttccctgaaggccatgggcatcaacgatttgctctcctttgactttatggatgct
cccccgatggaaactctcataactgccatggagcagctctataccctgggagctctggat
gatgaaggactgctgactcgacttgggcgcaggatggcagaattccccttggagccgatg
ttgtgtaagatgttgatcatgtccgtacatctgggatgcagtgaggaaatgttgacaata
gtctccatgctgtctgtgcagaacgtgttctacaggccgaaggataaacaagcacttgct
gatcaaaagaaagccaagttccatcagacagaaggtgaccacctcactctactggctgtg
tacaattcctggaagaataataagttttcaaatccctggtgctatgaaaattttatccag
gcccgatccttacgcagggcacaggacatccgcaagcagatgttgggcattatggacagg
cacaagctggatgtggtatcctgtgggaaggcaacagttcgagtccagaaggccatctgc
agtggcttcttccgaaatgcagcaaagaaggatccccaggaaggttatcggacactcatt
gatcaacaagtagtctatatccacccctccagtgctctcttcaacaggcagccagaatgg
gtggtgtatcatgaactggtgctgaccaccaaggaatatatgcgtgaagtgacaactatc
gatcctcgctggctggtggaatttgccccggctttcttcaaggtttctgatccaaccaag
ctgagcaaacagaaaaagcagcagcggctggaacccctgtacaatcgctatgaggagccc
aatgcttggcggatatcgcgtgcattcagacggcgatga
DBGET
integrated database retrieval system
