Rissa tridactyla (black-legged kittiwake): 128919214
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Entry
128919214 CDS
T09443
Symbol
HDAC5
Name
(RefSeq) histone deacetylase 5 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
128919214 (HDAC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtd03036
]
128919214 (HDAC5)
Enzymes [BR:
rtd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
128919214 (HDAC5)
Chromosome and associated proteins [BR:
rtd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
128919214 (HDAC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
128919214
NCBI-ProteinID:
XP_054080351
LinkDB
All DBs
Position
19:complement(8448696..8470034)
Genome browser
AA seq
1307 aa
AA seq
DB search
MDPQSDTEGGSSREPSLELLSHAQLHATLPAPGAEGPAEVCGAPEACGERRGPGLDAAAR
ERQLQRELLALKQQQQLQKQLLFAEFQKQHEHLTRQHEVQLQKHLKQQQEALAARRQQEL
EQQRQRERQEALEQQQRLEQLHALRTKDKSRESAIASTEVKLKLQEFLLSKTKEPGTGPP
NHSLPQHPKCWAHHTSLDQSSPPQTGSPGTPPSYKLPLLGTYDGRDDFPLRKTASEPNLK
VRSRLKQKVAERRSSPLLRRKDGTVISTFKKRAIEITVSSVCSSAPGSGPSSPNSSHSAI
AENGFTGSVPNIHAEQLLPQHRALTLDGASQLSLYTSPSLPNISLGLQATVTVTNSHLNA
SPKLSPQAEAERPAVATLRPGAALTGKFLSTSSIPGCLLGVALEGDPPAGPASLLQHVLL
LEQARQQSTLIAVPLHGQSPLVTGERAGSVRTVSKLPRHRPLSRTQSSPLPQSPQALPHG
ALPHGTLQHHFLDKQQVQLGKLLPKAGELARQPPTHPEETEEELTEQQSPPPGDGVPPGP
PVAIASPDASDPPERLQDPEMPHEEPGDSGDEAEGSGVSDVTELGVTYKQVFPEAPLQLY
PAPTLGILALPHPALARTQSSPASAAIKPPAPDGPPKHLFTTGVVYDTFMLKHQCTCGNT
NIHPEHAGRIQSIWSRLQETGLLGKCERIRGRKATLEEIQTVHSEHHTLLYGTSPLNRQK
LDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGEIK
NGFAVIRPPGHHAEESTAMGFCFFNSVAISAKLLQQKLSVGRILIVDWDIHHGNGTQQAF
YSDPNVLYISLHRYDDGNFFPGSGAPEEVGSGMGVGYNINIAWTGGVDPPIGDVEYLTAF
RTVVMPIANEFSPDVVLVSAGFDAVEGHLSPLGGYSVTAKCFGHLTKQLMMLAGGRVVLA
LEGGHDLTAICDASEACVSALLGLELEPLDPSLLQQKPNVNAVATLEKVIEIQSKHWGSV
KRFATAVGCSLLEAQKGEAEEAETVTAMALLSVGAEQGSADPQPRYGPPGAPTVHGDTHV
PGGVHGATRVLGGLHVPGGVHGATRVLGGLHVPGGVHGATRVLGGLHVPGGVHGATRVLR
GMCVPGAVHSATCVVAGGACPLGCACSHVCPQGDACSLGSTWSHMCPRGAVCPLGCAWTH
MCPRGDVCPWGCARSYVCPQGGAGWGGAACPLGCTWSHMFRHGDACPWGCAWNHACPQGA
ACPLGSLWSHMCPCGAACPLGCAQTCACPWGGCVSLGVCVEPREFSG
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggacccccagagcgacacagagggggggtccagccgtgagccctcgctggagctcctg
tcccatgcccagctccacgccaccctccctgccccaggggcggaggggccggcagaggtg
tgtggggcacccgaagcgtgcggggagcgccgggggccagggctggatgcagcggcgcgg
gagcggcagctgcagcgggagctgctggccctcaagcagcagcagcagctccagaagcag
ctgctcttcgccgagttccagaagcagcacgagcacctcacccgccagcatgaggtccag
ctccagaagcacctcaagcagcagcaggaagcgctggccgcccggcggcagcaggagctg
gagcagcagcggcagcgggagcggcaggaggccctggagcagcagcagcgcctggagcag
ctccatgccctgcgcaccaaggacaagagccgcgagagtgccatagccagcacagaggtg
aagctgaagctgcaggagttcctgctcagcaagacaaaggagccgggcaccggccccccc
aaccattccctcccccagcaccccaaatgttgggctcaccacacctcgttggaccagagt
tcccccccccagaccggcagcccggggacccccccatcctacaaactccccctcctcggc
acctacgacggccgggatgatttcccgctccgcaaaaccgcctccgaacccaacctgaaa
gtgcgctcgcggttaaaacagaaggtggcggagcggagaagcagccccctcctgcgcagg
aaggacggcactgtcatcagcaccttcaagaagcgcgccatcgagatcacggtgtcctcg
gtgtgcagcagcgcccccggctccgggcccagctcccccaacagctcccacagcgccatc
gccgagaacggcttcaccggctctgtccccaacatccacgcggagcagctcctgccccag
caccgagccctgacgctggacggcgccagccagctcagcctctacacgtccccgtccctc
cccaacatctccctggggctgcaggccaccgtcaccgtcaccaactcccacctcaacgcg
tcccccaagctgtcaccgcaggcggaggctgagcggccagctgtggccactctgcgccct
ggggccgccctcactggcaagttcctgagcacgtcctccatcccgggctgcctgctgggg
gtggccctggaaggagaccctcctgccggccccgcgtccctgctgcagcacgtcctgctg
ctggagcaagcgcgccagcagagcaccctcattgctgtgcctctgcatgggcagtcgccg
ctggtgacaggggagcgcgcggggagcgtgcggacggtgagcaagctgccgcggcaccgg
cccctgagccgcacgcagtcgtccccgctgccccagagcccccaggccctgccccacggc
gccctgccccacggcaccctccagcaccacttccttgacaagcagcaggtccagctgggc
aagctgctccccaaggcgggggagctagcgcggcagccccccacccaccccgaggagaca
gaggaggagttgacggagcagcagtcgccccccccaggcgacggggtcccccctggcccc
cctgttgccatcgcctccccggacgccagcgaccccccagagcggctgcaggaccctgaa
atgcctcacgaggagccgggtgacagcggggacgaagccgagggctctggggtctccgat
gtcactgagctgggggtcacatacaagcaggtgttccccgaggcgccgctgcagctgtat
cctgcccccaccctgggcatcctggcgctgccccacccggccctcgcccgcacccagtcg
tcccccgccagcgccgccatcaagccccccgcacctgacgggccccccaagcatctcttc
accacaggtgtggtgtacgacaccttcatgctgaagcaccagtgcacctgtgggaacacc
aacatccaccccgagcacgctggtcgcatccagagcatctggtcccgcctgcaggagacc
ggactcctcggcaagtgcgagcgcatccggggcaggaaggcgacgctggaggagatccaa
acggtgcactcagagcatcacacgctgctctatggcaccagccccctcaaccgccaaaaa
ctcgacagcaagaagctcctgggtcccattagccagaagatgtacgcagtgctgccgtgc
gggggcatcggggtggacagtgacacggtgtggaatgagatgcactcctccagcgccgtg
cgcatggcagtgggctgcctggtggagcttgccttcaaggtggccgctggggagatcaag
aacggcttcgccgtcatccgcccccccggacaccatgcggaggagtccacggccatgggc
ttctgcttcttcaactcggtggccatctcggccaaactgctccagcagaagctgagcgtg
ggcaggatcctcatcgtggactgggacatccaccacgggaacgggacccagcaagccttc
tacagcgaccccaatgtcctctacatctccctgcaccgctatgatgacggcaacttcttc
ccaggcagtggagcgcctgaggaggtcggcagcgggatgggagtgggctacaacatcaac
atcgcctggaccgggggcgttgacccccccatcggggatgtggagtatcttaccgccttc
aggaccgtggtgatgcccatcgccaatgagttctccccagatgtggtgctggtctcagcc
ggcttcgacgctgtcgagggtcacctctccccactcggtggctactccgtcaccgccaaa
tgttttggccacttgacgaagcagctgatgatgctggcagggggccgggtggtgctggca
ctggagggggggcacgacctgacggccatctgcgacgcctcggaggcctgcgtctccgct
ctgctcggcctggagctggagccgctggatccgtccctgctgcagcagaagccaaacgtg
aacgcggtggccaccctggagaaggtcatcgagatccagagcaagcactggggctcggtg
aagcgcttcgcgacggccgtgggctgctccctgctggaggcgcagaagggggaggcggag
gaggccgagacggtgacggccatggccctgctctcggtgggtgccgagcaggggagcgcc
gacccccagcccaggtatggccccccgggagcccccactgtgcatggagacacgcatgtc
cctgggggtgtgcatggagccacccgtgtccttggggggctgcatgtccctgggggtgtg
catggagccacccgtgtccttggggggctgcatgtccctgggggtgtgcatggagccacc
cgtgtccttggggggctgcatgtccctgggggtgtgcatggagccacacgcgtcctcagg
ggcatgtgtgtccctggggctgtgcacagtgccacatgtgttgtcgcgggtggtgcatgt
cccttgggctgtgcatgcagccacgtgtgtcctcagggggatgcatgttccctgggctct
acatggagccacatgtgtcctcggggggctgtatgtcccctgggctgtgcatggacccac
atgtgtcctcggggcgatgtatgtccctggggctgtgcacggagctacgtgtgtcctcag
ggaggggcggggtgggggggagctgcgtgtcccttgggctgtacatggagccacatgttt
cgtcatggggatgcatgtccttgggggtgtgcatggaaccatgcatgtcctcagggggct
gcatgtcccctgggctctttatggagccacatgtgtccttgcggggctgcgtgtcccctg
ggctgtgcacagacctgtgcatgtccttgggggggctgtgtgtccctgggggtgtgcgtg
gagccacgtgagttctcggggtga
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