Rathayibacter tanaceti: GSU10_04410
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Entry
GSU10_04410 CDS
T06377
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rte
Rathayibacter tanaceti
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rte03019
]
GSU10_04410 (hrpA)
Enzymes [BR:
rte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSU10_04410 (hrpA)
Messenger RNA biogenesis [BR:
rte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GSU10_04410 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
AAA_22
ResIII
T2SSE
AAA_30
nSTAND3
UvrD-helicase
SLFN-g3_helicase
NACHT
AbfS_sensor
AAA_16
Zeta_toxin
FtsK_SpoIIIE
PhoH
Motif
Other DBs
NCBI-ProteinID:
QHC54961
UniProt:
A0AAE6RIP6
LinkDB
All DBs
Position
complement(924553..928476)
Genome browser
AA seq
1307 aa
AA seq
DB search
MSDVLSIRYPPELPVSARRDDIAAAIRDNQVVIVAGATGSGKTTQLPKICLELGRESIAH
TQPRRIAARTIAERIAEELGDEVGGIVGYQVRFTDRASASTRIKLMTDGILLNEMNHDRM
LSRYDTIIIDEAHERSLNVDFLLGYLHRLLPQRPDLKVIITSATIDPQSFAAHFADASGE
PAPIIEVSGRTFPVEIRYRPLVAEEPEEDDDTDVPDATSGSRDLMTGIADALAELAREDP
GDVLVFLSGENEIRDAEDAIRGRNLPGTEVLPLYGRLSAADQHRVFERSRTPGVRRRVVL
ATNVAETSLTVPGIRYVIDGGTARISRYSARSKVQRLPIEAVSQASANQRSGRSGRTSAG
VAIRLYSEEDYLRRPEYTDPEILRTGLAAVILQMISLGLGDIASFPFLTPPDSRGIKDGL
DLLTELGALRAPGSPSAPPTPPRDATSVRDTPENAYPRGISRKGEAAAPQLTRIGRDLAR
LPIDPRFGRMVIESRRHGVSREVMAIVAGLTIQDVRERPLERRAQADQQHARFVDPTSDF
LTLLTLWNYLEEKQQELSSSAFRRLCKAEYLNYLRVREWQDVFRQLRQLARPLKLEIGDP
KVDPDGIHRSLLAGLLSQLGIKDTTSQQAQRAAKNRERQNVQYVGARNAKFSIFPGSALA
KKLPDAVMSAELVETSRLFARSNAAIDPAWAEAIAGDLVKRQFSEPHWEKSQGAAVAYEK
VTLYGVPIIGRRRVQFSRIDPSYARELFIRHALVEGEWESRHAFDRTNRALRAELERLEE
RTRRRDLLVDDEAVFDFYDRRLPRDITSVRSFDSWWRTAQHDEPDLLTMTQETLLPEDAE
EIDETAFPTQWRQADQRFRLSYRFEPGTEEDGVTVHVPLALLPRVTPLGFDWLVPGLRAE
LVTAMIKALPKHLRRNVVPANDWARKLTAALPHDVPNPPTESFAATLAGAIRREAGVVVQ
PDDFDLERIPSHLRVTFAVADERGRTIAAGKELAPLAERLRGRVRDEVARVVEARVPDAL
ERRSLTTWDMPELPRVTDTRQGGNTIRAYPALIDDGDSVSIRLLATPEDQAREHPRGVRR
LLLLATPSPVAYVQQHLTSHEKLVLAQSPYQNTTALFTDCLLACVDAVLWRMKPDGMLFL
RAEFDAVRDRVSASVMDAMFETVKTVTTILTTARGVEKALKASTSMALLPALTDAREQLS
GLVYPGFVSATGVERLRHLPRYLGAITERFGKIAENVGRDRVWLNEVQAALELYRSAGGV
LPLPPHSPERLARARWMIEELRVSFFAQPLGTAESVSLQRIRKVLAT
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgtgctcagcatccgctacccacccgaactccccgtgtcggcgcggcgcgac
gacatcgcggcggcgatccgcgacaaccaggtggtcatcgtggcgggcgccaccggctcc
ggcaagaccacccagctgcccaagatctgcctcgagctcggccgagagagcatcgcgcac
acccagccccgccgcatcgcggcccgcacgatcgccgagcgcatcgcggaggagctcggc
gacgaggtcggcgggatcgtcggctaccaggtgcgcttcaccgaccgcgcgagcgcgtcg
acgcggatcaagctgatgaccgacggcatcctgctcaacgagatgaaccacgaccggatg
ctcagccggtacgacacgatcatcatcgacgaggcgcacgagcgcagcctcaacgtcgac
ttcctgctcggttacctgcaccgcctgctcccgcagcgccccgacctcaaggtgatcatc
acctcggcgaccatcgatccgcagagcttcgccgcgcacttcgccgacgcctccggggag
cccgcgccgatcatcgaggtctcggggcgcacgttcccggtcgagatccgctaccgcccg
ctggtcgccgaggagccggaggaggacgacgacaccgacgtgcccgatgcgacgagcggc
agccgcgacctgatgacggggatcgccgacgcgctggccgagctggcgcgcgaggatccg
ggcgatgtgctggtcttcctctcgggcgagaacgagatccgcgacgccgaggacgcgatc
cgcggcaggaacctgccgggcaccgaggtcctccccctctacgggcgcctctcggccgcc
gaccagcaccgcgtcttcgagcgatcgcgcactccgggcgtgcgtcggcgcgtcgtcctc
gcgaccaacgtggcggagacgagcctcaccgttccggggatccggtacgtgattgacggc
gggacggcgcgcatctcccgctacagcgcgcgctcgaaggtgcagcgcctcccgatcgag
gcggtctcgcaggcctcggcgaaccagcgctccgggcggtcggggcgcacgagcgcgggc
gtcgcgatccggctctactcggaggaggactacctccggcgccccgagtacaccgacccc
gagatcctccgcaccggcctggccgcggtgatcctgcagatgatctcgctcggcctgggc
gacatcgcctccttccccttcctcactcctccggattcgcgcggcatcaaggacggcctc
gacctcctcaccgagctcggcgccctccgcgcccccggctccccctccgcccctcccacc
cctccgcgagatgccacttcggtacgcgacacgccggagaacgcgtacccacgtggcatc
tcgcggaagggggaggcggcggcgccgcaactcacgcggatcgggcgcgatctcgcgcgg
ctccccatcgatccgcgcttcgggcgcatggtcatcgagtcgcgccggcacggagtgagc
cgggaggtgatggcgatcgtcgcagggctgacgatccaggacgtccgcgagcgtccgctc
gagcgccgtgcgcaggccgaccagcagcacgcgcgcttcgtggatccgaccagcgacttc
ctcaccctgctcacgctctggaactacctggaggagaagcagcaggagctctcctcgagc
gcgttccgacgcctctgcaaagccgagtacctcaactacctgcgcgtgcgggagtggcag
gacgtgttccgccagctccggcagctcgcgcgcccgttgaagctcgagatcggcgacccg
aaggtggatccggacgggatccaccggagcctgctcgccggcctgctctcgcaactgggc
atcaaggacaccacctcgcagcaggcgcagcgcgcagcgaagaaccgcgagcgccagaac
gtgcagtacgtcggtgcccgcaatgccaagttctcgatcttccccggcagcgcgctcgcc
aagaagctgccggacgcggtgatgagcgccgagctcgtcgagaccagccgcctcttcgcc
cgctcgaacgcggcgatcgaccccgcctgggccgaggcgatcgccggcgatctggtgaag
cggcagttcagcgagccgcactgggagaagtctcagggcgcggccgtggcctacgagaag
gtcaccctctacggagtgccgatcatcgggcgccgccgcgtgcagttctcgcggatcgac
ccgtcctacgcccgcgagctgttcatccggcacgccctcgtcgagggcgagtgggagtcg
cggcacgccttcgatcgcacgaaccgggccctgcgcgccgagctcgagcggctggaggag
cgcacccgtcgccgcgatctgctggtcgacgacgaggccgtcttcgacttctacgaccgc
cgcctcccgcgcgatatcacctcggtgcgctccttcgactcctggtggcgcaccgcccag
cacgacgagcccgacctgctgacgatgacgcaggagacgctcctcccggaggatgcggag
gagatcgacgagaccgcgttcccgacccagtggcgccaggccgaccagcgcttccgcctc
tcgtaccggttcgagccgggcacggaggaggacggagtgacggtacatgtgccgctcgcg
ctgctgccccgcgtcacgccgctcggcttcgactggctcgtgccggggctccgggccgag
ctggtgaccgcgatgatcaaggcgctgcccaagcatctgcggcggaacgtggtgcccgcg
aacgactgggcgcggaagctgaccgctgcgctcccgcacgatgtgccgaacccgccgacg
gagtcgttcgccgcgaccctcgcgggagcgatccgccgcgaggcgggcgtcgtcgtgcag
ccggacgacttcgacctcgagcgcatcccctcgcacctgcgggtcaccttcgccgtcgcg
gacgagcgcgggcgcacgatcgccgcgggcaaggagctggcgccgctggccgagcggctg
cgcggccgggtccgcgacgaggtcgcccgcgtggtcgaggcccgcgtccccgacgcgctc
gagcgtcggagcctgacgacgtgggacatgccggagctgccccgcgtcaccgacacccgg
cagggcggcaacaccatccgcgcctatccggccctgatcgacgacggcgactccgtgtcg
atccgcctcctcgccacccccgaggaccaggcgcgcgagcatccgcgcggcgtgcgccgc
ctcctgctgctcgcgacgccgagccccgtcgcctacgtgcagcagcacctcacgtcgcac
gagaagctcgtgctcgcgcagagcccgtaccagaacaccacggcgctcttcaccgactgc
ctgctcgcctgcgtcgacgcggtgctctggcggatgaagcccgacgggatgctcttcctc
cgcgccgagttcgacgccgtgcgcgaccgggtctcggcgagcgtcatggacgcgatgttc
gaaaccgtgaagacggtgacgacgatcctcaccacggcccgcggggtcgagaaggcgctc
aaggcctcgacgagcatggcgctcctgccggcgctgaccgatgcgcgcgagcagctctcg
ggcctggtgtacccgggtttcgtctcggcgacgggcgtggagcggctgcggcacctcccc
cggtacctcggagcgatcaccgagcgcttcggcaaaatcgccgagaacgtgggccgcgac
cgcgtctggctgaacgaggtgcaggccgcactggagctgtaccgatcggccggcggcgtc
ctgccgctgcccccgcactcgccggagcgcctggcccgcgcccgctggatgatcgaggag
ctgcgggtgagcttcttcgcgcagcctctcggcaccgccgagagcgtctccctccagcgc
atccgcaaggtgctggcgacctga
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