Rathayibacter tanaceti: GSU10_04590
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Entry
GSU10_04590 CDS
T06377
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rte
Rathayibacter tanaceti
Pathway
rte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GSU10_04590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rte03400
]
GSU10_04590 (mfd)
Enzymes [BR:
rte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GSU10_04590 (mfd)
DNA repair and recombination proteins [BR:
rte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GSU10_04590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QHC54993
UniProt:
A0A166HDU3
LinkDB
All DBs
Position
967765..971376
Genome browser
AA seq
1203 aa
AA seq
DB search
MPLNEIISALSRASTFDDALAYATRNADFSVADGLRVPLLAGLLERRAEAGRPQAALVVT
ATGRDSENVRASLGCVLPEADVVEFPAWETLPHERLSPSAEIVGRRLDALRRMKHWSGER
PLVVVASVRAALQPVADNLADIEPIRLVKGGRGYDLGRIAAELVDLAYARVDMVTRRGEF
AVRGGILDVFPAVAEHPSRVDFFGDEVDSLRGFSVADQRSLPGEAESVVLPPSRELLLVP
AVRQRAREMLHEFPSLSVMLAKIAEGIPVEGMESLAPALLERLVPISHYLPEGAAVAVLA
PERVATRAISLAETNREFLQAAWSAATAGAEAPIDLASGEFISLGALRDSVTVSAPGTEA
PDHPWWTMSTFRQGPAAGEAEVLPEELGIDEILAVRVEGEPVPGFGANVEGALAHVHSRL
ADGWTVVLTAPGTGTVERTDQVLAEHEVAARIVADLPPALEPGLAYVVQASVDHGFEVEE
AKLALLTDTEFYGRAVGYDSRAVKKLASRRKNVVDPLQLTPGDHVVHATHGIGRFVELSQ
REVSSGGRNAVKTKREYLVLEYAPSKRGFPGDKLLVPTDQLDLLSRYVGGEAPALSKMGG
SDWAQAKSKARRAVRDIAVELVKLYSARMASRGHAFPPDTPWQRELEEAFPFAETPDQLT
VIDEVKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQHLE
TFQERFAGFPVHLRALSRFQTPKESKETIDGLADGTVDMVIATHRLLSDNIAFKDLGLLV
IDEEQRFGVEHKDKLKALKKNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEERHPIL
TFVGPYSEKQISAAIRRELLREGQVFFVHNRVSTINRVASQLAELVPEARIAVAHGKLSE
AQLERIIVDFWERKFDVLVSTTIVETGLDIPNANTLIVDRADKYGLSQLHQLRGRVGRGR
ERAYAYLLYDEMKPLSETAHDRLQTLAANSDLGGGMQIALKDLEIRGAGNLLGGEQSGHI
QGVGFDLYLRMIGEAVDTFRGEVAEGQTELRLELPVDARIPEEYVDSERLRLEAYQKLSA
ASSPTAKEGSIDLVVEELTDRYGELPEAVENLILVSRLRMRAQKAGLSDVVAMGSNVRVA
PAHLPDSIQARLRRMYPGAKYLQQADAVVVPMPVLDGVPLGDRALIEWVASLLDAIFPEP
VPV
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtgcccctcaacgagatcatctcggcgctgtcgcgcgcctccacgttcgacgacgcactg
gcgtacgcgacccgcaacgccgacttctcggtcgccgacggcctccgggtgccattgctg
gccggcctcctcgagcggcgggcggaggcgggtcgcccgcaggcggcgctcgtcgtgacc
gcgacgggccgcgactccgagaacgtgcgcgcctccctcggctgcgtcctccccgaggcc
gatgtggtcgagttccccgcgtgggagacgctgccgcacgagcgcctgagcccgagcgcc
gagatcgtcggccggcggctcgacgcgctgcggcggatgaagcactggtcgggggagcgt
ccgctcgtggtcgtcgcctcggtgcgcgccgccctgcagcccgtcgcggacaacctggcc
gacatcgagccgatccgcctggtgaagggcgggcgcggctacgatctcggccgcatcgcc
gccgagctggtcgatctggcgtacgcgcgggtcgacatggtcacccggcggggcgagttc
gcggtgcgcggcggcatcctcgacgtgttcccggccgtcgccgagcatccgagccgggtg
gacttcttcggggacgaggtcgactccctccgtggcttctccgtcgccgatcagcgctcg
ctgccgggcgaggctgagtccgtcgtcctgcccccgagccgcgaactgctgctcgtgccg
gccgtccgccagcgtgcgcgcgagatgctgcacgagttccccagcctgtcggtcatgctc
gcgaagatcgccgaggggatcccggtcgaggggatggagtccctcgcgcccgcgctcctg
gagcggctcgtcccgatctcgcactacctccccgagggcgcggccgtcgccgtgctcgcc
cccgagcgggtcgcgacccgcgcgatcagcctcgccgagacgaaccgcgagttcctccag
gccgcgtggagcgcggcgacggccggggcggaggcgccgatcgatctcgcgtcgggcgag
ttcatctcgctcggcgcgctgcgcgactccgtgacggtcagcgcccccggcaccgaggct
cccgatcacccgtggtggacgatgagcacgttccgccagggtcccgccgcgggcgaggcc
gaggtgctgccggaggagctcggcatcgacgaaatcctcgccgttcgggtcgagggcgag
ccggtccccggattcggcgccaacgtcgagggcgcgctcgcgcacgtccactcgcggctc
gccgacggctggacggtcgtgctgacggcccccggcacgggcaccgtggagcgcaccgac
caggtgctcgccgagcacgaggtcgccgcccgcatcgtcgccgacctgccgccggctctc
gagccgggtctcgcctacgtcgtgcaggcctccgtcgatcacggcttcgaggtcgaggag
gcgaagctcgcgctgctcaccgacaccgagttctacgggcgcgccgtcggctacgactcc
cgcgccgtgaagaaactggcgtcgcgtcgcaagaacgtcgtcgatccgctgcagctgacg
cccggcgaccacgtggtgcacgccacccacggcatcggccgcttcgtcgagctctcccag
cgcgaggtctcgagcggcgggcgcaacgcagtgaagaccaagcgcgagtacctcgtgctc
gagtacgccccgagcaagcgcgggttcccgggcgacaagctcctcgtcccgaccgaccag
ctcgacctgctctcgcgctacgtcggcggcgaggccccggcgctgagcaagatgggcggg
agcgactgggcgcaggcgaagagcaaggcgcgccgcgcggtccgcgacatcgcggtcgag
ctggtgaagctctactccgcccggatggcctcccgtgggcacgcgttcccaccggacacc
ccgtggcagcgcgagctggaggaggccttccccttcgcggagacgcccgaccagctcacc
gtgatcgacgaggtcaaggccgacatggagcggcccatcccgatggatcgcctgctctcg
ggcgatgtcggcttcggcaagaccgaggtcgccgtgcgcgccgcgttcaaggccatccag
gacggcaagcaggtcgcgatgctcgtgccgacgacgctgctcgtccgccagcacctcgag
acgttccaggagcgcttcgccgggttccccgtgcacctgcgcgcgctcagccgcttccag
acgcccaaggagtcgaaggagacgatcgacggcctggccgacggcacggtcgacatggtc
atcgcgacccaccgcctcctctccgacaacatcgctttcaaagacctcggcctcctcgtc
atcgacgaggagcagcgcttcggcgtggagcacaaggacaagctgaaggcgctgaagaag
aacgtcgacatcctcgcaatgagcgccacgccgatcccgcgcacgctcgagatggcggtg
accggcatccgcgagatgtcgacgctcgccacgccgccggaggagcgccacccgatcctg
accttcgtcggcccgtactccgagaagcagatctcggccgcgatccggcgcgagctgctg
cgggagggtcaggtgttcttcgtgcacaaccgcgtctccacgatcaaccgtgtcgcctcg
cagctcgccgagctcgtgccggaggcgcgcatcgcggttgcgcacggcaagctgagcgag
gcgcagctcgagcggatcatcgtcgacttctgggagcgcaagttcgatgtgctggtctcg
acgaccatcgtcgagaccggtctcgacatccccaacgccaacacgctgatcgtcgaccgc
gccgacaagtacgggctctcgcagctgcaccagctgcgcggacgcgtggggcgcgggcga
gagcgcgcctacgcctacctcctctacgacgagatgaagccgctcagcgagaccgcgcac
gatcggctgcagacgctcgccgccaactccgacctcggcggcggcatgcagatcgcgctg
aaggacctcgagatccgcggcgcgggcaacctcctcggcggcgagcagtccggccacatc
cagggcgtgggcttcgacctctacctgcggatgatcggcgaggccgtcgacactttccgc
ggcgaggtggccgaggggcagaccgagctccgactcgagctgcccgtcgacgcgcgcatc
ccggaggagtacgtcgacagcgagcggttgcgcctggaggcgtaccagaagctgtcggcc
gcgtcgtcgccgaccgcgaaggaggggagcatcgacctggtggtcgaggagctgaccgat
cgctacggcgagcttcccgaggcggtcgagaacctcatcctggtgtcgcggctgcggatg
cgcgcgcagaaggcgggcctcagcgacgtggttgcgatgggctcgaacgtgcgggtcgcc
cccgcgcacctgcccgactcgatccaggcgcgcctgcgccggatgtacccgggtgcgaag
tacctccagcaggccgatgcggtcgtggtgccgatgccggtgctcgacggcgtgccgctc
ggtgatcgggcgctcatcgagtgggtggcgtcgctcctcgatgcgatcttcccggagccg
gtccccgtctga
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integrated database retrieval system
