Rathayibacter tanaceti: GSU10_05445
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Entry
GSU10_05445 CDS
T06377
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rte
Rathayibacter tanaceti
Pathway
rte03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GSU10_05445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rte03000
]
GSU10_05445
03400 DNA repair and recombination proteins [BR:
rte03400
]
GSU10_05445
Enzymes [BR:
rte01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GSU10_05445
Transcription factors [BR:
rte03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GSU10_05445
DNA repair and recombination proteins [BR:
rte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GSU10_05445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
QHC55132
UniProt:
A0AAE6V5N7
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All DBs
Position
complement(1153094..1154632)
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AA seq
512 aa
AA seq
DB search
MTRVRFPPSSGRPLCEARGVPESDPLFEERYRAVASRDARFDGRFLTGVHSTGIYCRPSC
PATTPQPGNVRFYPTAAAAHEAGLRACKRCLPDAVPGSPEWNLRDDTAARAMRLIGDGVV
DREGVEGLASRLGYGARHLGRILREELGAPPLALARAQRAQTARLLLTGTDLPVSEVAFA
AGFASIRQFNATIAEVYERTPTALRSSGRGGRTGVGTQAGATTLELRLPVRAPFDAGVLD
GLGARAVAGIEEAAPGSYARSLVLPGGAALVRLDADASAVRCTATLASIADVGPLVSRVR
RLLDLDADAQAIDEALGADPLLAPLVAAVPGIRLPGSVDPAETLVRTLLGQQLPVAAART
TLARLVAHLGDELPESIATASITRTFPSPGAIAERGAEVLRGPARRRETVRRVCALLAEG
SLRLDAGSSREELSERLLAVPGIGAWTAGSVAMRVTGDPDVLLTGDPALRSAAAALGLPS
DPHALAEAGRRWAPWRSYAGLHLWRASGRPSA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgtgtccgattcccgccatcgtccgggcgtccgctgtgcgaggctcggggggtg
cccgagtccgatccgctcttcgaggagcgctaccgcgctgtcgcctcgcgcgatgcccgc
ttcgacgggcgattcctgaccggtgtgcactccaccgggatctactgccgcccgagctgc
cccgcgaccactccccagcccgggaacgtccgcttctacccgaccgccgccgccgcgcac
gaagcggggctgcgcgcctgcaagcgctgtctcccggatgcggtgcccggatcgcccgag
tggaacctgcgtgacgacacagcggcccgggcgatgcgtctgatcggcgacggagtcgtc
gaccgcgagggcgtcgaggggctcgcctcccgactcggctacggagcacggcacctcggc
cggatcctccgcgaggagctgggggcgcctccgctcgccctcgccagggcgcagcgcgcg
cagaccgctcgactgctgctgaccggcaccgatctgccggtgtcggaggtcgcgttcgca
gccggcttcgcgagcatccgccagttcaacgccacgatcgccgaggtctacgagcggacg
ccgaccgcactgcgctcctcggggcgcggcggtcgcaccggtgtcgggacacaggctggg
gcgacgacgctcgagctgcggctgccggtgcgggccccgttcgacgccggagtcctcgac
gggctcggggcgcgcgccgtcgccgggatcgaggaggcggcgcccgggtcgtacgcccgc
tcgctggtcctgcccggcggtgcggccctcgtccgcctcgacgccgacgcgagcgcggta
cggtgcacggcgaccctcgcgtcgatcgccgatgtcggcccgctcgtctcccgggtccga
cgcctgctcgacctcgacgccgacgcacaggcgatcgacgaggcgctcggcgcggatccg
ctgctcgccccgctggtcgccgccgtgcccggcatccgcctgccgggttccgtggacccc
gccgagacgctggtgcgcacgctgctcgggcagcagctccccgtcgctgccgcccggacg
accctggcgcgcctggtcgctcacctcggcgacgagctgcccgagtcgatcgccacggcc
tcgatcacccgcacgttcccctcccccggtgcgatcgccgagcgcggcgcggaggtgctc
cgcggcccggcccggcggcgcgagaccgtgcgccgcgtctgcgcgttgctcgccgagggg
agcctgcgcctggacgccggctcgagccgtgaggagctctcggagcgcctgctcgcggtc
cccggcatcggagcctggaccgcaggctccgtcgcgatgcgggtcaccggcgaccccgac
gtgctcctgaccggcgatcccgcactgcggagcgcggcggcggcgctcggcctgccgtcc
gatccgcacgccctcgccgaggcgggccggcggtgggcgccctggcgcagctacgccggg
ctgcacctgtggcgcgcgtccggccgcccgtctgcgtga
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