Rathayibacter tanaceti: GSU10_05530
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Entry
GSU10_05530 CDS
T06377
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rte
Rathayibacter tanaceti
Pathway
rte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSU10_05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rte03019
]
GSU10_05530
03016 Transfer RNA biogenesis [BR:
rte03016
]
GSU10_05530
Enzymes [BR:
rte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GSU10_05530
Messenger RNA biogenesis [BR:
rte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GSU10_05530
Transfer RNA biogenesis [BR:
rte03016
]
Prokaryotic type
tRNA degradation factors
GSU10_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
RNase_PH_C
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_1st
KH_2
CdsD_C
DndB
DUF1322
Motif
Other DBs
NCBI-ProteinID:
QHC55148
UniProt:
A0A162GKC9
LinkDB
All DBs
Position
1168157..1170421
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AA seq
754 aa
AA seq
DB search
MEGPEITFAEAVLDNGSYGTRTVRFETGRLAQQAQGAVAAYLDEDTMLLSATSASKNPKD
NFDFFPLTVDVEERSYAAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVDGLRNEVQ
IVITVLSIAPDEFYDALAINAASASTQISGLPFSGPVAGVRLALMSDGSGNDQWVAFPKA
SQLENAVFDLTVAGRVVTNQDGSSDVAIMMVEAEATESSWNLIKAGATKPSEDVVAQGLE
AAKPFLRALVEAQSKLAAETAKPVKDYPVFLPYAQETYDNVAELSYDELVRVYQIADKVE
RQDADDALKAKVKEQIAERIASGQLPAEAYGQVGAAYKSVTKVVVRGRILRDGVRIDGRG
LADIRPLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRYLHHY
NFPPYSTGETGRVGSPKRREIGHGFLAERALVPVLPSREEFPYAIRQVSEALSSNGSTSM
GSVCASTLSLLNAGVPLRAPVAGIAMGLVSDVVDGQTRYAALTDILGAEDALGDMDFKVA
GTSEFVTAIQLDTKLDGIPSSVLDAALKQAKDARTTILAVLTAAIDQPDEMAPTAPRVIS
VQIPVDKIGELIGPKGKTINAIQDETGADISIEEDGTVYIGAVDGPSAEAARAQVNAIAN
PTNPEVGEQFLGTVVKLATFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQK
LLVSITKIDDRGKLSLAPVVAEEAEAAVEAPVQS
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
ttggaaggtcctgaaatcacattcgccgaagccgttctcgacaacggctcgtacggcacc
cgcaccgtccgcttcgagaccggccgcctcgcgcagcaggcccagggagccgtcgccgcc
tacctcgacgaggacaccatgctcctctcggccacgtcggcctcgaagaacccgaaggac
aacttcgacttcttcccgctgaccgtcgacgtcgaggagcgctcctacgccgccggcaag
atccccggctcgttcttccgccgcgagggccgcccctcgaccgaggcgatcctggtctgc
cgcctgatcgaccggccgctgcgcccgtcgttcgtcgatggcctgcgcaacgaggtccag
atcgtcatcacggtcctcagcatcgcgccggacgagttctacgacgccctcgcgatcaac
gccgcgagcgcctcgacccagatctcgggcctgcccttctccggccccgtcgccggcgtg
cgtctcgcgctcatgtccgacggatcgggcaacgaccagtgggtcgcgttccccaaggcc
tcgcagctcgagaacgccgtcttcgatctcacggtcgcgggccgcgtcgtcaccaaccag
gacggctcctccgacgtcgccatcatgatggtcgaggccgaggccaccgagtcctcctgg
aacctcatcaaggcgggagcgaccaagcccagcgaggacgtcgtcgcccagggcctcgag
gcggcgaagcccttcctccgcgccctcgtcgaggcgcagtcgaagctggcggccgagacg
gcgaagccggtcaaggactacccggtgttcctgccctacgcgcaggagacctacgacaac
gtcgcggagctcagctatgacgagctcgtccgcgtctaccagatcgccgacaaggtcgag
cgacaggacgccgacgacgcgctgaaggcgaaggtcaaggagcagatcgccgagcgcatc
gcctcgggccagctcccggccgaggcctacggccaggtcggtgccgcgtacaagtccgtc
acgaaggtggttgtccgtggccgcatcctccgtgacggcgtgcgcatcgacggacgcggc
ctcgccgacatccgaccgctcgacgccgaggtgcaggtcattccgcgcgtccacggctcg
gcgatcttccagcgcggcgagacccagatcctgggtgtcaccacgttgaacatgctcaag
atggagcagcagatcgattcgctgtcgcccgtcaccaagaagcgctacctgcaccactac
aacttcccgccctactcgaccggtgagaccggtcgcgtcgggtcgccgaagcgtcgcgag
atcgggcacggcttcctcgccgagcgcgccctcgtgccggtgctgcccagccgcgaggag
ttcccctacgcgatccgtcaggtgtccgaggcgctcagctccaacggctccacctcgatg
ggctccgtctgcgcctcgaccctgtcgctcctcaacgccggtgtgccgctgcgcgccccg
gtcgcgggcatcgcgatgggcctcgtctccgacgtcgtcgacggtcagacccgctacgcg
gcgctgaccgacatcctgggcgccgaggacgcgctcggcgacatggacttcaaggtggcc
ggcacgtccgagttcgtcacggcgatccagctcgacacgaagctcgacggcatcccgtcg
tcggtcctcgatgccgcgctcaagcaggccaaggacgcccgcaccacgatcctcgcggtg
ctcacggcagccatcgaccagcccgacgagatggccccgaccgcgccccgcgtgatctcg
gtgcagatccccgtcgacaagatcggcgagctgatcggccccaagggcaagacgatcaac
gcgatccaggacgagaccggcgccgacatctccatcgaggaggacggcaccgtctacatc
ggcgccgtcgacggaccgtcggccgaggccgctcgcgcccaggtcaacgccatcgcgaac
ccgacgaaccccgaggtcggcgagcagttcctcggaaccgtcgtcaagctcgcgacgttc
ggcgcgttcgtctcgctcctgcccggcaaggacggactgctgcacatcagcgaggtccgc
aagctcgccggtggcaagcgcgtcgagaacgtcgaggacgtcctcggtgtcggccagaag
ctgctggtctcgatcacgaagatcgacgaccgcggcaagctctcgctcgcgcccgtcgtg
gccgaggaggccgaggccgcagtcgaggcccccgtccagagctga
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