Rathayibacter tanaceti: GSU10_12145
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Entry
GSU10_12145 CDS
T06377
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rte
Rathayibacter tanaceti
Pathway
rte03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GSU10_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rte03021
]
GSU10_12145
03400 DNA repair and recombination proteins [BR:
rte03400
]
GSU10_12145
Enzymes [BR:
rte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GSU10_12145
Transcription machinery [BR:
rte03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GSU10_12145
DNA repair and recombination proteins [BR:
rte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GSU10_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ADIP
SCNM1_acidic
DUF1690
Motif
Other DBs
NCBI-ProteinID:
QHC56311
UniProt:
A0AAE6RLA4
LinkDB
All DBs
Position
complement(2572704..2576603)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIIDVDDDGRHADMPGLENELRLEIKTLSDQRDSRIADRLARLETD
LAALEAEGAKSDQKRRTKDGAEKEMGQIRKSFDEDIARLESVWEQFRTLKVGDLKPEDAV
FNELVDRYGVYFEAYMGAEAIKKRLEQFDLQAEAETLHLQIAEGKGQKKIRAIKRLRVVN
SFLATGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTIREGAAGEGR
AFSSVSEAILAKDQGSLHLNSKVKIRMSDVYFAQGQAPEGVELDENGKVTAPILLETSLG
RALFNEALPVDYPYFEQVADKTTISGIVNDLAERYPKVEVAASLDRIKDAGFYWATRSGV
TVSLSDILTPPSKPEIIAGYEKKAAKVESEYDKGLTTQSERRQELVKIWTEATDEVAKAM
RANFPTNNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIARPIISSYREGLSVAEY
FIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSKGLDLPIMLQDATGS
WIQDSNVENSVYARSLATAATNEAGEVIAEAGEDVGDVLIEKLVGAEVRHIKVRSVLTCE
SAVGVCAACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQG
LPRVQELFEARTPKGASPIAEAAGRITIEDTDRARRVILQPDNGDEAVIYPVLKRSQLLV
EDGQSVVLGQQLHVGTVDPKEVLRVLGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVR
QMLRKVTVVDHGDTELLPGELVDRSRYSEVNRAALTEGKRTASARQEVMGITKASLATES
WLSAASFQETTRVLTQAAMEGKRDPLVGLKENVIIGKLIPAGTGLPKYRNVSVEATEEAK
AERYPNRIFADDAAFSDADLSFVDFDSFSSDGYEPGNYS
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaacttttgacgagctgcgcatcggcctcgcgacggccgatgacatc
cgtcgctggtcgcacggtgaagtgaagaagcccgagaccatcaactaccgcaccctgaag
cccgagaaggacggtctgttcggcgagcagatcttcggaccctcgcgggactgggagtgc
tcctgcggcaagtacaagcgagtccgcttcaaaggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagtcctcggtccgccgcgagcggatgggccacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggcgtcccctcgcgcctcggatacctgctggacatg
gcgccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcatcgacgtggac
gacgacggccgccacgccgacatgcccggcctcgagaacgagctccggctcgagatcaag
accctctcggaccagcgtgactcccgcatcgcggaccgcctggcgcgcctcgagaccgac
ctcgccgccctcgaggcggagggcgcgaagagcgaccagaagcgccgcaccaaggacggc
gccgagaaggagatgggccagatccgcaagtccttcgatgaggacatcgcgcgactcgag
agcgtgtgggagcagttccgcaccctcaaggtcggcgacctcaagccggaggacgcggtc
ttcaacgagctcgtcgaccgctacggcgtctacttcgaggcctacatgggcgccgaggcg
atcaagaagcgcctcgagcagttcgacctccaggccgaggccgagacgctccacctccag
atcgccgagggcaagggtcagaagaagatccgtgccatcaagcgcctgcgcgtcgtcaac
tcgttcctcgcgaccggcaactcgccggccgcgatggtgctcgacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgatggcggccggttcgccacgagcgacctg
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgcctccgccgcctgctcgacctc
ggtgcacccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggcggtcgacgcc
ctcttcgacaacggccgccgcggtcgtcccgtcacgggtaccggcaaccgcgccctgaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctgggcaag
cgcgtcgactactcgggccgctccgtcatcatcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatcaagcgcctg
atcgatctgtcgcacgcgcagaacatcaaggcggccaagcgcatggtcgagcgttcgcgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgttctgctgaaccgc
gctccgacgctgcaccgcctcggcatccaggccttcgagccccagctggtcgagggcaag
gccatccagctgcacccgctcgtctgcgcggcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgccgctgtcggtcgaggcccaggccgaggcgcgcatcctgatgctc
gcgtccaacaacatcctcaagccctccgacggccgtccggtgaccctgcccacgcaggac
atgatcatcggcctccaccacctgacgaccatccgtgagggtgccgccggtgagggacgc
gccttctcctccgtctcggaggcgatcctggcgaaggaccagggctcgctgcacctgaac
tcgaaggtcaagatccgcatgtcggacgtgtacttcgcgcagggtcaggcccccgagggc
gtcgagctcgacgagaacggcaaggtcaccgcgccgatcctgctcgagacgagcctcggc
cgtgccctcttcaacgaggcgctgccggtcgactacccctacttcgagcaggtcgccgac
aagacgaccatctccgggatcgtcaacgacctcgcggagcgctacccgaaggtggaggtc
gccgcctccctcgaccggatcaaggacgcgggcttctactgggccacccgctcgggtgtc
accgtgtcgctgtcggacatcctcacgcctccgtcgaagcccgagatcatcgcgggctac
gagaagaaggccgcgaaggtcgagtccgagtacgacaagggtctgaccactcagtcggag
cgccgccaggagctcgtgaagatctggaccgaggcgaccgacgaggtcgccaaggcgatg
cgcgccaatttcccgaccaacaacaccatcaaccgcatggtcacctccggtgcccgcgga
aactggctgcaggtgcgcaacatcgccggcatgcgaggcctggtgaacaacccgaagggc
gagatcatcgcccgaccgatcatctcctcgtaccgcgaggggctgtcggtcgccgagtac
ttcatcgccacgcacggtgcccgcaagggactggccgacaccgcactgcgcaccgcggac
tcgggctacctgacgcgtcgactcgtcgacgtctcgcaggacgtcatcatccgcgaggac
gactgcggcacctcgaagggcctcgacctgccgatcatgctccaggacgccaccggctcc
tggatccaggactcgaacgtcgagaactcggtctacgcccgctcgctcgccaccgcggcg
acgaacgaggccggcgaggtcatcgctgaggcaggcgaggacgtgggcgatgtgctcatc
gagaagctggtcggagccgaggtgcgccacatcaaggtgcgctccgtcctgacctgcgag
tccgcggtcggcgtctgcgcggcctgctacggccgttcgctcgccaccggcaagctcgtc
gacatcggagaggctgtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcag
ctcacgatgcgcaccttccacaccggtggctcggcctcggccgacgacatcacgcagggt
ctgccccgcgtgcaggagctcttcgaggcccgcacccccaagggtgcgtcgccgatcgcg
gaggccgccggtcgcatcacgatcgaggacaccgaccgcgcccgccgggtcatcctccag
ccggacaacggcgacgaggcggtcatctacccggtgctcaagcgttcgcagctcctcgtc
gaggacggacagagcgtcgtgctcgggcagcagctgcacgtcggaaccgtcgaccccaag
gaggtcctgcgcgtgctgggcgtccgcgaggtgcagaagcacctggtcgggggagtccag
ggcgtctaccgctcgcagggtgtgccgatccacgacaagcacatcgaggtcatcgttcgt
cagatgctccgcaaggtcaccgtggtcgaccacggcgacaccgagctgctgccgggtgag
ctcgtcgaccgctcgcgctacagcgaggtcaaccgtgcggctctgaccgagggcaagcgc
accgcgtcggcccgtcaggaggtcatgggtatcaccaaggcctcgctggcgaccgagtcg
tggctgtcggccgcgtccttccaggagacgacccgtgtcctgacgcaggcggcgatggag
ggcaagcgcgatccgctggtcggcctcaaggagaacgtgatcatcggaaagctgatcccg
gccggaaccggtttgcccaagtaccggaacgtctcggtcgaggcgacggaggaggcgaag
gccgagcggtaccccaaccgcatcttcgccgacgacgccgcgttcagcgacgccgacctg
tcgttcgtggacttcgactcgttctcgagcgacggctacgagccaggcaactacagctga
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