Rathayibacter tanaceti: GSU10_13920
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Entry
GSU10_13920 CDS
T06377
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K20539
IclR family transcriptional regulator, blcABC operon repressor
Organism
rte
Rathayibacter tanaceti
Pathway
rte02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GSU10_13920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rte03000
]
GSU10_13920
Transcription factors [BR:
rte03000
]
Prokaryotic type
Helix-turn-helix
IclR family
GSU10_13920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
MarR_2
DUF7343
HTH_5
HTH_20
MarR
Dimerisation
HTH_24
HTH_47
HTH_AsnC-type
HTH_Crp_2
HTH_10
Motif
Other DBs
NCBI-ProteinID:
QHC56617
UniProt:
A0A166H840
LinkDB
All DBs
Position
complement(2946350..2947156)
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AA seq
268 aa
AA seq
DB search
MARPEAPPTSVDSEKGSGAPAVSRAMRILDLLADAGGPRTLTDIARELGIAKSSTSNLCA
ALEEGRLIRRVGSGFLLGRRTVELGSHYLAGFDPVREFYRLCEESPVLSRQLVQIALLDG
TRVLYLAVHEGRERFTLSASVGDRYPASATAVGTALLAELDDAEIAERFADDRDIVVFTD
RSTSSSRELLRKVRTARERGYAIDDGELHPSVLGVAVAVPAATRSDLSVAVGVSLVRPMD
EDQEEVVAALREAAAALGRPPLVAGAPA
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggcccgccccgaagcgcctccgacgtcggtcgactccgagaaggggtcgggcgctccg
gccgtgtcccgcgcgatgcggatcctcgacctcctcgccgacgccggcgggccgcgcacg
ctgacggacatcgcccgcgagctcggcatcgccaagtcgtcgacgtcgaacctctgcgcc
gcgctggaggaggggcggctgatccgtcgcgtcggctcaggcttcctcctcggtcggcgc
accgtcgagctcggcagccactacctcgcgggtttcgacccggtgcgcgagttctacagg
ctctgtgaggagtcgccggtgctctcgcggcaactggtgcagatcgcgctgctggacggc
acccgcgtcctctacctcgcggtgcacgagggccgcgagcggttcacgctctcggcgagc
gtcggcgaccggtaccccgcctccgccacggccgtcggcaccgcgctgctggccgagctc
gacgacgccgagatcgccgagcgcttcgccgacgaccgcgacatcgtcgtcttcaccgac
cggtcgacgtcctcctcgcgcgagctgctccggaaggtccggacggcgcgcgagcgcggc
tacgcgatcgacgacggcgagctgcaccccagcgtcctgggcgtcgccgtcgccgtgccc
gcggccacccgatccgatctctccgtcgcggtgggcgtctcgctggtgcgcccgatggac
gaggatcaggaggaggtcgtcgcggctctccgcgaggctgcggcggcactgggccgtccg
ccgctcgtcgccggcgcccccgcctga
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