Rathayibacter tanaceti: GSU10_13970
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Entry
GSU10_13970 CDS
T06377
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K20539
IclR family transcriptional regulator, blcABC operon repressor
Organism
rte
Rathayibacter tanaceti
Pathway
rte02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GSU10_13970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rte03000
]
GSU10_13970
Transcription factors [BR:
rte03000
]
Prokaryotic type
Helix-turn-helix
IclR family
GSU10_13970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
MarR_2
MarR
Rrf2
DprA_WH
Dimerisation
HTH_20
TrmB
HTH_Crp_2
Rio2_N
FliC_D2
HTH_5
FaeA
DUF7346
HTH_47
HTH_9
DUF4423
HTH_11
HTH_Cmi2_C
Penicillinase_R
BLACT_WH
Motif
Other DBs
NCBI-ProteinID:
QHC56625
UniProt:
A0A162IZJ9
LinkDB
All DBs
Position
complement(2957810..2958601)
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AA seq
263 aa
AA seq
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MSSITSPVSLGAPTAAETAAPAAFRAIQVLEVMSRSRGPLSLTDIAARAPLAKSSVHNLL
TTLEAAGMVRRSGGGWVLAYKALEIGQSVLTSTDLVGEFRRTAAQYGVLGRETVLLAVLD
GLDVLYLARHDGHQPVRLASDIGRKLPAVVTALGKAMLAGLPDADLDERLSTITELPRPT
RASHRTVSELLGDLMRVRQQGYAVDAEENTIGVTCFSVPIPGAAQPTAISTTLLTQRLTP
ELRDALVRELTALAHSLRLFART
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcgatcacctcgcccgtctccctcggcgctcccaccgcggccgagaccgccgcg
cccgccgccttccgggcgatccaggtcctggaggtgatgagccggtcccgcggaccgctc
tcgctgaccgacatcgcggccagggccccgctcgcgaagtcgtccgtgcacaacctgctg
accacgctcgaggcggcgggcatggtccgccgctcgggtgggggctgggtcctcgcctac
aaggccctcgagatcgggcagtcggtgctcacctcgaccgacctcgtcggcgagttccgg
cgcaccgccgcgcagtacggggtcctcggccgcgagaccgtgctgctcgcggtgctcgac
gggctcgacgtcctctacctcgcccggcacgacggccaccagccggtccggctcgcgagc
gacatcggccgcaagctcccggccgtggtgaccgcgctcggcaaggcgatgctggccggc
ctccccgacgccgacctcgacgagcggctctcgacgatcaccgagctgccccgtccgacc
cgtgcctcccatcgcaccgtctccgagctgctcggcgacctcatgcgggtgcgtcagcag
ggctacgccgtcgacgccgaggagaacacgatcggagtcacctgcttcagcgtgccgatc
ccgggcgccgcccagcccaccgccatctcgaccaccctgctcacccagcggctcaccccc
gagctgcgcgatgcgctggtgcgcgagctcaccgcgctcgcccactccctccggctcttc
gcccgcacctag
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