Ramlibacter terrae: HK414_25200
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Entry
HK414_25200 CDS
T08049
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rtea
Ramlibacter terrae
Pathway
rtea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HK414_25200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtea03019
]
HK414_25200
03400 DNA repair and recombination proteins [BR:
rtea03400
]
HK414_25200
Enzymes [BR:
rtea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HK414_25200
Messenger RNA biogenesis [BR:
rtea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HK414_25200
DNA repair and recombination proteins [BR:
rtea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HK414_25200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
GFA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJW85437
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All DBs
Position
4697102..4698838
Genome browser
AA seq
578 aa
AA seq
DB search
MRRVRAVLRDTFGLNRLRPGQSAVIERVLAGQPTLAVMPTGAGKSLCYQLPALLIEGRTV
VVSPLIALMKDQCESMRELGVKCVQVNSGVDGEEARAAEEAVADGSARIIMTTPERLAEP
AFRELLLAHPIGLLAVDEAHCISQWGHDFRPAFLEVGQLRKRLGQPVVLALTATATDEIA
DDICKQLGIPATGVVNTSSYRPNLDLRVVPVEKEADKLAQVLKLVRATRGSGIVYTATVK
AAEAVHEALQAADESVGLYHGKLPSAERHAAQEAFMSGERRVMVATNAFGLGIDKADIRF
VLHYQLPATLEAYYQEAGRAGRDGELARCTLLFLRGDKAIQQFFMAGRYPGEEDATAVVQ
ALQQDPPEGADAWTLPLVQARVGRPRSKVQVALGLLRKDKIVAQARDGALRLLAKVAGSE
RMRELTASYGRKRDLDREALERMVFYAQTGQCRWRVVLDHLEGGSPFERCCHCDNCRRIA
AHEAVVEELLRNAPANDAEADAAHAAEPAGFARGDVVEVRRYGRGVVEEATATQVTVAFA
DRSRRSFLPEFVRRAAARRGRKPAMAAAAATPPARVAA
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcgtgcgcgcggtgctgcgcgacaccttcgggctgaaccggctgcgtccgggc
cagtccgcggtgatcgaacgggtgcttgccggccagcccacgctggcggtgatgcccacc
ggggccggaaagtcgctgtgctaccagcttccggcgctgctcatcgaaggccgcacggtc
gtcgtgtcgccgctgatcgcgctgatgaaggaccagtgcgaatccatgcgcgagctcggc
gtcaagtgcgtgcaggtcaacagcggcgtcgacggcgaggaggcccgcgccgccgaagaa
gcggtggccgacggcagcgcccgcatcatcatgaccacgcccgaacggctggccgagccg
gccttccgggagctgctgctggcgcatccgatcgggctgctcgcggtggacgaggcgcat
tgcatctcgcaatgggggcacgacttccgtcccgccttcctcgaggtcggccagcttcgc
aaacggctgggccagccggtggtgctggcgctgaccgcgaccgccaccgacgaaatcgcc
gacgacatctgcaagcagctgggcattccggcgaccggcgtggtcaacacgagttcctac
cgccccaacctcgacctgcgcgtggtgccggtggaaaaggaagccgacaagctggcgcag
gtgctcaagctggtgcgcgccacccggggcagcggcatcgtctacaccgcgacggtgaag
gcggccgaagcggtgcacgaagccttgcaggccgccgatgaatcggtcgggctctaccac
ggcaagctgccgtcggcggaacgccacgcggcgcaggaagccttcatgtcgggcgagcgg
cgcgtgatggtggcgaccaacgcgttcggcctcggcatcgacaaggccgacatccggttc
gtgctgcactaccagttgccggccacgctggaagcgtattaccaggaagccggacgggcc
gggcgcgacggcgaactggcgcgctgcacgctgctcttcctgcgcggcgacaaggcgatc
cagcagttcttcatggccggccgctatcccggcgaggaagacgccaccgccgtggtgcag
gccttgcagcaggatccgccggaaggcgccgacgcctggacgctgccgctggtgcaggcg
cgcgtgggccggccgcggtccaaggtgcaggtcgcgctggggctgctgcgcaaggacaag
atcgtggcgcaggcgcgcgacggcgcgctgcggctgctggcgaaggtcgccggcagcgag
cgcatgcgcgagctgacggcgtcgtacggccggaagcgcgacctcgaccgcgaagcgctg
gagcgcatggtgttctacgcgcagaccggccagtgccgctggcgggtggtgctggaccac
ctcgaaggcgggtcgccgttcgagcgctgctgccactgcgacaactgccgccgcatcgcg
gcgcacgaagcggtcgtcgaggagctgctgcgcaacgcgccggccaacgatgccgaagcc
gacgcggcgcacgccgccgaacccgccggcttcgcgcgcggcgacgtcgtggaagtgcgc
cgctatggccgcggcgtggtcgaggaggccaccgctacgcaggtgacggtggcgttcgcc
gaccgcagccgccgcagtttcctgcccgagttcgtccgccgcgcggcggcgcggcgcggc
cgcaagcctgccatggcggccgcggccgccaccccgccggcgcgcgtggccgcctga
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