Rana temporaria (common frog): 120908943
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Entry
120908943 CDS
T07929
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtem00536
]
120908943 (COL13A1)
Glycosaminoglycan binding proteins [BR:
rtem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120908943 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120908943
NCBI-ProteinID:
XP_040176401
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Position
8:105085672..105438066
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AA seq
741 aa
AA seq
DB search
MEGKEVWKGAVSHSSAFARSCKNIPCRTEDYGKCSRFPALLGCGFALVSIFSLFLSLMVL
CRTSDLQSRVSDLEKLRYTQLSALVSADQMETAILGRVDQLLEEKLKSHLPRLRETRDTS
VKCICPPGPPGTRGKRGQNGEPGPPGASGRPGIPGAPGEPGMSVIGPRGPPGQPGTRGFP
GFPGPIGLDGKSGHPGQKGEKGDLGSPGPKGNPGTAGAKGEKGHCADYSHREYLSTTFAA
LRSNQILTLKGEQGQAGIQGLPGLPGPPGPPGPVGPPGDTGLSGVTGPPGKAGEPGKPGK
DGKGMPGPQGPKGESGTAGIPGRKGEVGEAGLPGALGLPGTAGVKGDQGEVGQKGERGMP
GMPGKHGTKGELGVSGAKGEKGDTGNALGGVKGEPGTPGLPGPPGPKGDTGAVGQPGIPG
QEGDKGAAGAKGDQGHSGPRGPKGDPGKFNIVEYNSNLSEALQGPPGPPGVPGVPGQKGE
IGLPGTPGHDGDKGPRGKPGEVGPSGPVGPPGQDGLQGPKGDTGPRGMHGPKGDKGDVGQ
SGSPGLDGPTGEKGDDGDQGVPGSPGLPGPIGLPGLTGEKGDSGDKGESGNSVSGPPGPP
GVPGPVGPPGLSGQKGEVGETGANGEKGSQGEKGDKGPLGLPGASGLDGRIGPPGIPGPI
GVPGPAGPKGERGNKGDPGVPGPTGPAGPPGPTGEKGSRGERGKKGSRGPKGDKGDQGAP
GLDAPCPLGEDGLPVQGCWNK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaaggaagtgtggaaaggtgctgtcagccacagtagtgccttcgctaggagt
tgtaagaacatcccctgtaggacagaggactatgggaagtgcagcaggttccctgcactc
ttgggatgcgggtttgcccttgtatcaatattttccctgttccttagtctcatggttttg
tgtagaacttctgacctacagtccagggtttctgatttagagaagctgcgatacactcag
ctatctgccttagtctccgcagaccaaatggagacagctattttgggaagagttgaccaa
ctgctggaagagaaactgaaatctcatctaccaagacttcgagagacaagagatacgagt
gtaaagtgtatatgtccacctgggcctcctggaacaaggggcaagagaggacaaaatggg
gagccaggaccacctggagctagtggacgacctggtattccgggcgctccaggagaaccg
ggcatgtctgtcataggaccccgtggccctcctggtcagcctggaacacgaggtttccct
ggatttcccggcccaataggattagacggcaagtcaggccatccagggcaaaaaggtgaa
aaaggagatttgggttctcctggtccaaagggaaatccaggaacagcaggtgccaaagga
gaaaagggtcattgtgcggattactcccacagggaatatttaagtacaacttttgcagct
ctgcgctccaatcagattcttactttgaagggggaacagggtcaggcaggaattcaaggt
ctaccagggctaccgggcccacctgggccacctggaccagtaggacctccaggagataca
ggattgtcaggggttactggcccacctggaaaagcaggtgagcctggcaagccaggaaaa
gatggaaaaggcatgcctggacctcagggacccaagggagagtcagggactgcaggaatc
ccgggaaggaagggggaagtgggtgaagctggcttgccaggggcacttgggcttcctgga
acggcaggtgtaaagggcgatcagggcgaggtgggacagaagggagagagaggcatgccc
gggatgccagggaaacatggaacaaagggtgaactaggagtctcaggagcaaagggtgaa
aagggtgacactggcaatgcacttggtggagttaaaggagaacctggtactccgggccta
ccaggacctccaggaccaaagggagacaccggtgctgttggccaacctggaattccaggt
caagagggtgataagggtgctgcaggagcaaagggagatcaaggccattctggaccaaga
ggtcctaaaggggatccaggaaaattcaacattgtggaatataatagcaacctaagcgag
gcattacagggtcctcctgggccaccaggtgttccaggtgtaccaggacagaagggtgaa
atcggattgcctggcactcctggccatgacggggacaagggccctcgagggaaacctggt
gaggttggaccttcaggtccagtaggacctccaggacaggatggacttcaaggaccaaag
ggagatacaggccctaggggaatgcatgggccaaaaggagataagggagatgtaggacaa
tcaggatcacctggtcttgatggccccactggagaaaagggagacgatggcgaccaagga
gttccaggatctccaggtcttcctggcccaattggacttccagggcttacaggagagaag
ggtgattctggagacaaaggagaatctggaaactccgtctctgggccaccaggacctcca
ggtgttcctggacctgtgggcccacctgggctttctggccaaaagggtgaagtaggagag
actggtgcaaatggggaaaagggaagtcagggagaaaaaggagataaaggtcctttgggc
ttaccaggtgcttcaggtttagacggcagaattggtccaccggggatacctgggccaatt
ggagttccaggaccagcaggaccaaaaggggaaagaggcaataaaggagatcctggtgta
ccgggaccaacgggaccagcagggccacctggtcctactggtgagaagggaagccggggg
gaaagggggaagaaaggctctagggggcctaaaggggataagggagaccaaggagcgcct
ggattagatgcaccctgcccgttgggagaagatggtttacctgtacaaggctgctggaat
aagtga
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