Rana temporaria (common frog): 120911231
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Entry
120911231 CDS
T07929
Symbol
POLR2B
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03020
RNA polymerase
rtem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120911231 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
120911231 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120911231 (POLR2B)
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120911231 (POLR2B)
Enzymes [BR:
rtem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120911231 (POLR2B)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120911231 (POLR2B)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120911231 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
120911231
NCBI-ProteinID:
XP_040178453
LinkDB
All DBs
Position
1:complement(376487407..377088655)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYEEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTTGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQIQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKVKXRSVRIPQIGDKFASRNGQKVTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatgcagacgaagatatgcagtatgaggaggatgatgacgaaataactccggat
ctgtggcaggaagcatgttggattgtcataagttcttactttgacgagaaaggcttggtg
cgacagcagcttgattcttttgacgagttcattcagatgtctgtgcagagaatcgtggaa
gatgcaccacctattgacttacaggctgaagcacagcatactactggagaagtagaagag
ccaccaagataccttttgaagtttgagcaaatatatttatctaaaccaacacactgggaa
agagatggtgccccttcaccaatgatgccaaacgaagcaagactaagaaatttaacgtat
tctgcccctctctacgttgatatcacaaagactgtcataaaagaaggggaggaacagatt
caaacgcagcatcagaaaacttttattggaaaaataccaataatgttgcgttctacatac
tgcctcttgaatggccttactgatcgcgatctatgcgagttaaatgaatgtccactagac
ccaggaggttactttatcattaatgggtctgagaaggttttaattgctcaagaaaaaatg
gccacaaacactgtatacgtctttgcaaagaaagattcaaagtatgcttatacggccgag
tgccggtcctgcttggagaattcttcaagaccaacaagttctatatgggtcagcatgctt
gcaaggggaggtcagggagccaaaaaaagtgctattggtcagcgtattgttgctacgttg
ccttatattaaacaagaagtgcccattatcattgtgttcagggcattggggtttgtatcc
gacagagacatattggaacacattatctatgactttgaagatcctgagatgatggaaatg
gtgaaaccctctcttgatgaggcctttgttattcaggagcaaaacgtggccttgaacttc
ataggttccaggggtgcgaagcctggtgttacaaaagaaaaaagaatcaaatatgcaaaa
gaagttcttcagaaagaaatgcttcctcacgttggtgtcagtgacttctgtgagactaaa
aaagcctacttcttggggtacatggtgcatcgactgcttcttgctgctttgggaagaaga
gagcttgatgatagagaccattatggaaacaaaagactggacctcgcaggacctctgctt
gcctttctctttagaggaatgtttaaaaacttgctaaaagaagtaaggatctatgcacag
aaattcattgatcgaggaaaagactttaatttggaactggcaattaagacgagaataatt
tcagatggcttaaagtactccttggctactggaaattggggcgaccaaaagaaagcccat
caagctagagctggtgtttcacaggttttgaacagattgacgtttgcatcaactctttcg
cacttgcggagattaaactcccctattggcagagatggaaaacttgccaaacctagacag
ctgcataacaccttatggggaatggtatgccctgcagagactcctgagggtcatgctgtg
ggtcttgtaaagaatcttgctttaatggcttatatatcggttggctctcagccttcacca
atattggagttcttggaagaatggagtatggaaaaccttgaagaaatttctcctgctgcc
attgcagatgctacaaaaatatttgtgaacggatgctgggttggaatacacaaggatcca
gaacaactaatgaatacacttcgaaagctgcgtcgtcaaatggacatcattgtgtcagag
gtctcaatgataagggatataagggaaagagaaatcagaatctacacggatgcaggaagg
atttgtcggccgcttctgattgtagaaaaacaaaagttgttgctgaaaagaagacacatt
gaccagcttaaagagagagaatacaataattatagttggcaggacctggtggctagtgga
gttgttgaatacattgatacacttgaagaggagacggtcatgcttgctatgacgcctgat
gatttgcaagaaaagggtgttgcttattgttcaacatacacacattgtgaaattcaccca
tccatgattctaggagtctgtgcttcaattataccatttcctgaccacaaccagtctcct
aggaatacctaccagtctgctatgggtaaacaagctatgggcgtctatattaccaatttt
catgttcgtatggatactttagctcatgtgctatattaccctcaaaagcccttggttacc
accagatcaatggagtacctgcgtttcagagaacttcccgctggcattaattctattgtt
gctattgcttcttatactggatataaccaagaggattctgtcatcatgaaccgctctgct
gtggacagaggtttcttcaggtctgtcttctatcgttcctataaagaacaggagtccaaa
aaaggatttgaccaagaagaaatttttgagaaacctactcgtgaaacttgtcaaggcatg
cgacatgcaatttatgataaattagatgatgatggtttaattgcacctggtgtcagggtc
tctggagatgatgtaatcattggcaaaactgtaacattgcctgaaaatgaggatgagctt
gaaagcacaaatcgccggtacaccaagagggattgcagcacttttcttcgtacaagtgaa
actggaattgtggatcaggttatggtaacgctcaaccaggaaggttacaagttttgcaag
gtgaagtaacggtctgttagaatccctcagattggagataagtttgctagtcgaaacgga
cagaaggttacctgtggaattcagtacagacaggaggatatgccttttacttgtgaaggt
attacccctgatattatcattaacccccatgccatcccttcacgtatgacaattggacac
ttgattgaatgtctccaagggaaggtgtccgcaaataagggggaaattggtgacgcaact
ccatttaatgatgcagttaatgtgcagaagatttcaaatttgttatcagactatgggtac
catcttagaggaaatgaggtcctgtacaatggatttaccggtcgtaaaatcacgtcacaa
atttttattggacctacttactatcagaggttaaagcacatggtagatgataagattcat
tcccgtgcaagaggccctattcagattttaaacagacagccaatggaaggtagatcacgt
gatggaggtcttcgttttggagaaatggaacgtgactgtcaaatagcccatggtgctgca
cagtttcttcgtgaaagattgtttgaagcttctgacccctaccaagtacatgtttgtaat
ctatgtggattaatggcaattgcaaacaccagaacccacacctatgaatgcagaggatgt
cgaaacaaaacacaaatatccttggtgcgaatgccttatgcctgcaaacttctatttcag
gagcttatgtcgatgagcattgccccacgcatgatgtcatcctag
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integrated database retrieval system
