Rana temporaria (common frog): 120913019
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Entry
120913019 CDS
T07929
Symbol
SMC1A
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04110
Cell cycle
rtem04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
120913019 (SMC1A)
04114 Oocyte meiosis
120913019 (SMC1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtem03036
]
120913019 (SMC1A)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
120913019 (SMC1A)
Meiosis-specific proteins
Cohesin complex and associated proteins
120913019 (SMC1A)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
ABC_tran
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
120913019
NCBI-ProteinID:
XP_040178610
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All DBs
Position
9:3483258..3520157
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AA seq
1228 aa
AA seq
DB search
MGFLKLIEIENFKSYKGRQIVGPFRRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKT
LRDLIHGAPVGKPAANRAFVSMVYEEDSGTEKVFSRHIISGSSEYRINSKVVQLADYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELVSEYDKCKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARAQIQLQLFKLYHNESEIEKLNK
ELGSKNKEIEKDKKHMDKVEEELKDKKKDLGKIMREQQSIEKEIKEKDAELNQKRPQYIK
AKENTSHKIKKLEAAKKSLQNAQKQYKKRKGDMDELEKEVQSVEKAKQEFEERMEEESQS
QGRDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKLREIEENQKRIEKLEEYIATSKQSLEEQKNLEESLTEEVEGAKRRIDEINKELNQV
MEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRY
EPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLAMNMQEKSKLESELANFNPRINDIKRIIQSRDREMKDLKEKMNVVEDEVFEEF
CLEIGVRNIREFEEEKVKRQNEIAKKRLEFENQKTRLGIQLDYEKNQLKEDQGKVQQWEQ
SVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHQMEEIRKKLGG
ANKEMTHLQKEVTAIETKSEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEEGEESVS
SSQKSSTVYAREALIEIDYSELSEDLKDAVADDDIKQEMSTLTQKLNEQQSVLQRISAPN
MKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQTKKERFDRFNGCFESVATNIDEI
YKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAI
HSYKPSPFFVLDEIDAALDNTNIGKVANYIKEQSMTNFQAIVISLKEEFYTKAESLVGVY
PEQGDCVISKVLTFDLTSYPDANPNPND
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcctaaagttgatagagatcgagaatttcaagtcgtacaaaggacggcagatc
gtaggacccttccgccggttcaccgccatcatcggccccaatggatccgggaagtccaat
cttatggacgccatcagctttgtgctgggggagaagacgagtaatctgagagtgaagact
ctgcgggatctcatccatggagcgccggtggggaaacctgccgctaaccgcgcctttgtc
agcatggtgtacgaggaggacagcgggacggagaaggtgttttcccgacacatcatcagc
ggatcttctgaatacagaatcaacagcaaggtggtccagctggcagactacagcgaagag
ctggagaagttggggatcctgatcaaagccaggaacttcttggtctttcagggggcagta
gaatcaatcgccatgaagaatcccaaggagcgtacggctttgttcgaagagatcagccgg
tcgggagaactggtgtccgaatacgataagtgtaagaaggagatggtgaaagcggaggaa
gacacgcaattcaattatcaccgcaaaaaaaacatcgccgccgagaggaaggaggccaaa
caggagaaggaagaggccgaacgttatcagcggttaaaagacgaggtggcccgagcccag
atccagttacagctgtttaagctttaccacaacgagtctgagatcgagaagctgaacaaa
gagctgggatccaagaacaaggagattgagaaagacaagaagcacatggacaaggtggag
gaggaactgaaggataagaagaaggatctgggcaaaattatgagagagcagcaatccatc
gagaaggagatcaaggagaaggacgctgagctgaatcagaagcgcccacaatacatcaaa
gccaaggaaaacacttctcacaagatcaagaagctggaagcagcgaagaagtcccttcag
aatgctcagaagcaatacaagaagcgtaagggggatatggatgaactggagaaggaggtg
caatctgtggagaaggccaagcaggaatttgaggagaggatggaggaggagagtcagagc
caaggcagagatcttacgctggaggaaaaccaggttaagaaatatcaccgcttaaaagaa
gaagccagcaagagggccgccactctggctcaggaattggaaaagtttaatcgcgatcag
aaggccgaccaagatcgtctggatttggaggagaggaagaaagtggagactgaagcgaaa
atcaaacagaaactgcgtgaaatagaagaaaaccaaaagagaatcgaaaaattggaggaa
tatatcgctaccagcaaacaatcgttggaagaacagaagaaccttgaagagagtttgaca
gaggaggtggaaggggctaaaaggagaatcgacgaaatcaacaaggagttgaaccaagtg
atggaacagctgggagacgccaggatcgatcgtcaagagagcagccggcaacaacgcaaa
gccgaaatcatggagagcatcaagaggctgtatccgggttctgtgtacgggcgactgatt
gacctctgccagcccactcagaagaagtaccagatcgccgtcaccaaggtgctcgggaaa
aacatggacgccatcattgttgattcggagaagacgggcagagactgcatccagtatatt
aaagagcagcgaggagagccggagactttccttcctctggattacttggaggtaaaaccc
accgatgagaagctgcgtgagctgaagggagcgaagttggtgattgacgtgatccgctat
gagccgccgcacatcaagaaggcgctgcagtacgcctgcggtaacgctctggtttgtgat
aatgtagaagatgctcgccggatagcctttgggggacatcagaggcacaaaacggttgct
ttggacggtactttgttccagaagtctggtgtgatctctggaggtgccagcgacttgaaa
gccaaagccaggcgatgggatgaaaaagcggtggataaactcaaggaaaagaaggaaaaa
ctaacagaagagcttaaggagcaaatgaaagcaaagcgcaaggaggcggagctaagacag
gtccagtctcaggctcacggtctgcagatgagacttaaatattcacagagcgatctggag
cagaccaaaacccgacacttggcgatgaatatgcaggaaaaatccaagctggaaagtgag
ttggccaacttcaacccgcgtatcaatgacatcaaaaggataattcagagccgggacagg
gagatgaaggacttgaaggagaagatgaatgtggtggaagacgaggtgtttgaggagttc
tgcctggagatcggtgtgcgtaacatccgagagtttgaggaagagaaggtgaagaggcag
aacgagattgcaaagaagaggttggagtttgagaaccaaaagacccgtctgggtatccag
ctggactatgagaagaaccagctgaaggaggaccaagggaaggtgcagcagtgggagcaa
tctgtgaagaaagatgaaaatgaaatcgagaagcttaaaaaggaggagcaaaggcacatg
aagatcatagatgagactatggctcagctgcaagatctgaagaaccagcacctggccaag
aagtccgaggtcaacgacaagaaccatcaaatggaggaaatccggaagaagctggggggt
gccaacaaagaaatgacacatctacagaaagaagtcactgcgatcgagaccaaatcggag
cagaagaggagcgatcggcacaatttgctgcaagcctgcaaaatgcaagatataaaactc
cctctgtctaagggcaccatggatgacatcagccaggaggagggagaggaatcggtcagc
agctctcagaaatcctctacggtgtacgcacgggaagcattgattgaaatagactacagc
gagctgtccgaggacctgaaggatgcggtggcggacgatgatatcaagcaggagatgagc
actttaacacagaagctgaacgaacagcaaagcgttctgcaacgtatctccgcccccaac
atgaaggccatggagaaactggagagcgtcagagacaaattccaggagacgtcagatgag
tttgaagcggcccgtaaacgagcgaagaaagccaagcaggcctttgagcagacgaagaag
gaaaggtttgacaggttcaatggctgctttgagtcggtggccaccaacattgatgagatc
tacaaagccttgtccaggaacagcagtgcccaggctttcctgggaccggagaatccggag
gaaccttacttggatggaatcaactataactgtgtggcccctgggaagaggttccgaccc
atggacaacttgtctggaggagagaagactgtagcagctctggctctgctctttgcaatc
cacagttacaagccgtccccgttcttcgttctggatgaaatagacgccgctctggacaac
accaacatcggaaaggtggccaattatattaaagagcagtcgatgaccaacttccaggcc
atcgtcatctccctcaaggaggagttctacacaaaggctgaaagtttggttggtgtttac
cccgagcaaggtgactgtgtgatcagcaaagtactgacctttgaccttaccagttacccg
gatgccaaccccaaccccaacgactaa
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