KEGG   Rana temporaria (common frog): 120913029
Entry
120913029         CDS       T07929                                 
Symbol
KDM5C
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
rtem  Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rtem01009]
    120913029 (KDM5C)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rtem03036]
    120913029 (KDM5C)
Enzymes [BR:rtem01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     120913029 (KDM5C)
Protein phosphatases and associated proteins [BR:rtem01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     120913029 (KDM5C)
Chromosome and associated proteins [BR:rtem03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    120913029 (KDM5C)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD PHDvar_NSD
Other DBs
NCBI-GeneID: 120913029
NCBI-ProteinID: XP_040178625
LinkDB
Position
9:3970232..4053189
AA seq 1501 aa
MEYDEFIPPPECPVFEPTWEEFADPLGYIARIRPIAEKSGICKIRPPVDWQPPFAVEVDN
FRFTPRIQRLNELEAETRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYTLSKIVREE
GGYELICRERRWSRVAQRMAYPSGKNIGSLLRSHYERIIYPFRMYQSGTNMADCGERPRY
DNEEKDKEYKPHSIPLRQSVQPSKTTSYGRRAKRLTQEDPDNSDPASQSSSQPPETSPPW
PEPTEEDIEKNPELKKLQIYGAGPKMMGLGLVAKDKNLRKKEGDVPECPPTLVVKDEVGE
PEESKLYIKRERSLSPEPCTKMTMRLRRNTSSAQFVSRVRHFGVDSYVCRICTRGDDDEK
LLLCDGCDDNYHTFCLLPPLPEPPKGLWHCPKCVMAECKRPPEAFGFEQATREYTLQSFG
EMADSFKADYFNMPVHMVPTELVEREFWRLVNSIEEDVTVQYGADIHSKEFGSGFPMMDG
KSELTPEEKTYATSGWNLNVMPVLEHSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDH
WSYSINYLHWGEPKTWYGVPSSSAEQLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMS
HGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLTAGRKCIDHYRRLRR
YCVFSHEELICKMAACPERLNLILAAAVHKEMLLLVQEERRLRKALMERGITEAEREAFE
LLPDDERQCQKCKTTCFLSALACYNCPQGLVCLYHIDDLCQCPPSRQYLRYRYTLDELPA
MLHKLKGRAESYDTWANKVRRALEFQDGGKTELQHLRVLETEAAEKKFAQNDLLQELKNI
IQEAESCMSDSKKLLDDPHPARSNAAVMTLDSLHKLIHRIQALPCVLNQLTKLEDLLEKA
EVLQEEAKKCLQSLPGSAPQMQDMVKRCHSLGVLPPEAEQLERHMRQGEWLSRVRAALVA
GRSGTLQELRSLLQEAVEVAESPAVEKARSELQELITIALRWEEKAKMCLEARQKHSPAT
LEAIIKEAENIPVQLPNTLSLKEALCKARAWSADVDEIQSGDHYPCLDDLEGLVAVGRDL
PVKMDELHQLEVQVTAANSWRDKAAKTFLRKSSCFTLLEVLCPSADISSSNTKRAQWRKE
KERGLYRSDMESLGLSAQDMRDPGCIVLAFKEGEQKEKAGILRLRTMNSSMERRCVCVCG
EPPAELMIRCELCQDLFHGLCVPTPRLTSSHRGTHSSPPPAWWEWDSRFLCPLCVRSRRP
RLQTILSLLVALQKLSVRLPEGEALQCLTERAMSWQDRARRVLATPEISAAAATLVEKRK
KLQHNKDPQALRETTCNEQTPLPHENGDSHLENCTAMPDLDAMAALLPQNEKTPFLEMSI
GSRALLEDLMLEGDLLEVTLEEELSIWRLLQVSQTACVERLKTLIEIDRCERRANRPKGK
DHDKRKKRRSERVEGGYPPPTLQKEEVGPKRSRSDRALDTAPEKEGPRKVGTESNQNGER
L
NT seq 4506 nt   +upstreamnt  +downstreamnt
atggagtatgatgagttcatcccgcccccggagtgccccgttttcgagccgacttgggag
gagtttgccgaccctctgggctatatagccaggatcagacccatcgcggaaaagtcggga
atatgcaaaatccgcccgcctgtagactggcagccgccgtttgcagttgaagtggataac
tttcgtttcacccctcgcatacagagactcaatgagttggaggctgaaaccagagtgaag
cttaactacttggaccaaattgcaaagttctgggagattcaggggtcctcgctcaaaatc
cccaacgtggagcgcagaattctggacttgtacaccctcagcaagattgtgcgggaagag
ggtggatatgagctgatctgccgagagagaaggtggtcgcgtgtggcgcagcgcatggcg
tatccctcaggaaagaacatcggctcccttctaagatcccactacgaacgcatcatatac
cctttccgcatgtaccagtctgggacaaacatggcggactgcggggaacggccgcgctac
gacaacgaagagaaggataaggagtacaaaccccacagcattcccttacgccagtctgtg
cagccttccaaaaccaccagctacgggcgacgcgccaagcgccttactcaggaggatcct
gacaactcagatcctgcctctcaaagctcctctcagccccccgaaacatcaccaccctgg
cccgaaccaacagaagaggacatagagaagaacccggagctaaagaaacttcagatctat
ggtgcaggcccaaaaatgatggggctcggtctggtggcaaaagacaaaaacctgcgcaag
aaagaaggcgatgtcccggaatgcccgccgacgctggtggtgaaggacgaggttggagag
ccggaggagagcaaactgtacataaagcgcgagaggtcgctcagtccggagccctgcact
aagatgaccatgcggctgcgtaggaataccagcagtgcccagtttgtaagtcgtgtaaga
cactttggggtggattcctacgtctgccgcatctgtacccgcggggatgacgatgagaag
ttattactgtgcgatggctgtgatgacaactaccacaccttctgcctgctacccccactt
cctgaacccccaaaaggcctttggcattgtcccaaatgtgttatggcggaatgtaaacgt
cctcctgaagcctttgggtttgaacaggcgacccgggaatacaccctgcagagttttggc
gagatggcggattcttttaaggcagattatttcaatatgccggttcatatggtgcccaca
gagctggtggagagggagttttggcgtctggtgaacagtatagaggaggatgttacggtg
cagtacggagcggacattcactccaaggagtttggcagtggcttccctatgatggatggg
aaatcggagctgactccggaggagaagacatatgccaccagcggctggaacctgaatgtg
atgcccgtgcttgagcattctgtgctgtgtcacatcaatgcagacatttctggcatgaag
gtgccctggctgtatgtgggcatggtgttttcagctttttgttggcacatcgaagatcac
tggagctattccatcaactatcttcattggggtgaacccaagacctggtacggggtgccc
tcctcttctgccgagcagcttgaagaggtcatgaagaaactcaccccggagctcttcgac
agtcagccggatctgctgcatcagttggttaccctaatgaaccccaacacactcatgtct
cacggtgttccggtggttcgcaccaaccaatgtgccggggagtttgtcatcacattccca
agagcctatcacagcggcttcaaccagggctacaactttgctgaagccgtcaacttctgt
acggctgactggctcacagcaggcagaaaatgtattgatcattaccgccgcctccggaga
tactgcgtcttctcccacgaagagctcatttgcaagatggctgcatgccccgagagactg
aacctcatcctggcggcggcggtacacaaggagatgctcttgttggttcaggaggagcgg
aggttgcggaaagcgttgatggagagaggaatcacagaggcggagcgggaagccttcgaa
cttcttcctgatgacgaaagacagtgtcagaagtgcaagaccacctgcttcctgtccgcg
ttggcctgttacaactgccctcagggcctggtgtgtctctatcacatcgatgacttgtgt
cagtgcccaccttcccgacagtatctcaggtatcgttacaccctggatgagcttccagca
atgttacacaagttaaaaggtcgggctgaatcctatgacacctgggcaaataaagtgcgg
cgtgctctggaattccaagatggcggcaagacagagctccaacatctgcgggtcttagaa
acggaggctgcagagaaaaaatttgcacagaacgatctgttacaggaactgaaaaatatc
atccaagaggccgaatcgtgtatgagtgactccaagaaactgctggatgacccgcacccc
gccagaagtaatgctgcagtcatgactctggacagtttacataagcttattcatcgtatc
caagctcttccatgtgtcttgaatcagctgacaaagctggaggaccttttggagaaggca
gaagtcttgcaagaagaagcaaagaagtgtttgcagtctctgccaggtagcgcccctcag
atgcaggacatggttaagcggtgccattctctaggagtgctcccacctgaagccgagcag
ttagagaggcacatgcgccaaggggagtggttatcgcgggtgcgggcagctctggtcgcc
gggcggtcgggcactcttcaggaattgcgctctctgcttcaggaagcggtggaggtggcg
gagagccctgcggtggagaaagctcgcagcgagctgcaggaactgatcaccatcgctcta
cgctgggaagagaaggcgaaaatgtgcttggaggccaggcaaaagcattcacctgccaca
ctagaggcaatcattaaagaagcagagaacatccccgtacagcttcccaataccctgagc
ctgaaggaagccctttgtaaggcccgagcctggagtgctgatgtggatgagatccagagc
ggggatcattacccatgcctggatgacttggaagggttggtggctgtgggtcgggactta
cctgtaaaaatggacgagctgcatcagctagaggtacaagtgacggctgcaaactcctgg
agggacaaagccgccaagaccttcctgaggaagagctcgtgcttcaccctattggaggtg
ctgtgcccgagtgcggatatttcctcaagcaatacgaaaagggctcagtggaggaaggag
aaagaacggggtctgtaccgatcagacatggagagcctggggctgtctgcacaggacatg
cgggaccctggctgcatagtcctggcatttaaagaaggtgaacagaaggagaaagccggc
attctgaggttacggacaatgaattcttccatggagagacgttgcgtttgcgtgtgcgga
gagcccccggcagagctaatgatccgctgtgaactttgccaggacttatttcacgggctg
tgcgtccccacccccagactgacttcttctcaccgcggtacacactcctcccctcctccg
gcctggtgggaatgggacagccgcttcttgtgcccgctctgcgtgcggtcgcgccgcccc
cggctgcagaccatcctgtctctgttggtcgctctgcagaaactgtccgtacggttgccg
gagggggaggcactgcaatgtttaacggaaagggccatgagctggcaggaccgagcgcgc
agggtcttggcgacgccggagatatcggccgccgcagcaaccttggtggagaaacggaag
aagctgcaacacaacaaagaccctcaggcactgagagagacgacctgcaatgagcagacg
cctctaccccatgagaatggagactcccacttggagaactgcacggcaatgccagatctg
gatgccatggccgctctcctccctcaaaacgaaaagacgccgttcctggaaatgtccatc
ggctctcgggcgcttttagaagacctgatgctggaaggggatctcctcgaagtgacgctc
gaagaagaactgagtatttggagattgctgcaagtgtcgcagacggcgtgtgtggagaga
ctaaagactcttatagaaatcgaccggtgcgaacggagggccaaccgtccgaagggaaaa
gaccacgataagaggaagaagaggaggagcgagcgggtggaagggggttaccccccacca
acactccagaaggaggaggtgggaccaaagagaagtcgcagtgatcgggcactggacaca
gcacctgagaaggagggtccaaggaaagtggggacagaaagtaaccagaatggagagcgt
ttgtga

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