Rana temporaria (common frog): 120913263
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Entry
120913263 CDS
T07929
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03013
Nucleocytoplasmic transport
rtem03015
mRNA surveillance pathway
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120913263 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
120913263 (DDX39B)
03015 mRNA surveillance pathway
120913263 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120913263 (DDX39B)
03041 Spliceosome [BR:
rtem03041
]
120913263 (DDX39B)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120913263 (DDX39B)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120913263 (DDX39B)
Spliceosome [BR:
rtem03041
]
Complex C
Other components
EJC/TREX
120913263 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120913263 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120913263
NCBI-ProteinID:
XP_040179024
LinkDB
All DBs
Position
9:complement(31969862..32014026)
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AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDNQTGTDSQELPVKKEMKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQVYVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEMLKKSCPHIVVGTPGRILALA
RNKTLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMQQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEQDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacagacgtagacaatgagctgttggactacgaggacgatgaggtggataac
cagactgggaccgattcccaggagctcccggtcaagaaggagatgaaaggttcctatgtg
tccatacacagctctggcttcagagatttcctcctgaaacctgaattacttcgtgccatt
gtggactgtggatttgaacatccatcagaagtacaacatgagtgcattccacaagccatc
ctgggcatggacattctctgccaggcaaagtctggcatgggaaaaactgcagtgtttgtc
ctggccacgctacaacagctggagcctgttacagggcaggtctacgtgttagtcatgtgt
cacaccagagagctggcatttcagatcagcaaagagtatgaacgattctccaagtacatg
ccatctgtgaaggtggctgtgtttttcggcggacttgcaattaagaaggatgaggagatg
ttgaagaaaagctgcccacacattgtggtcgggactcccggccgaattctggcgctagca
agaaacaagaccctaaacctgaaacacatcaaacacttcatcctggatgaatgcgacaag
atgctagagcaattagatatgcgcagagatgtgcaagaaatattccgtatgactcctcat
gagaagcaggtcatgatgttcagcgctaccctgagcaaggagattcgcccagtttgcaga
aagttcatgcaagacccaatggaaatctttgtggatgacgagaccaagctgactcttcac
ggactccaacaatattacgtcaagctcaaggacaatgagaaaaatcgcaaactatttgat
cttctagatctattggagttcaaccaggtggtcatctttgtgaagtccgttcaacgatgc
attgctctggctcagctgttggtggaacagaacttcccagctatcgctattcatcgtggg
atgcaacaggaggaaaggctttcccggtaccaacaattcaaggatttccagcgcaggatc
ctggttgccaccaatctttttggtcgcggcatggacattgagagagtgaacattgccttc
aattatgacatgccagaagactctgacacctatctgcacagggtggcacgtgctggtagg
tttgggacgaaaggtctggcaatcacgtttgtatcggatgagcaggatgcaaaaatccta
aacgaggttcaagatcggtttgaggtcaacatcagtgaactgcctgatgaaattgacatc
tcttcgtacattgaacagacccggtga
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