Rana temporaria (common frog): 120913511
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Entry
120913511 CDS
T07929
Symbol
VARS1
Name
(RefSeq) valine--tRNA ligase isoform X1
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120913511 (VARS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rtem01007
]
120913511 (VARS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rtem03016
]
120913511 (VARS1)
Enzymes [BR:
rtem01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
120913511 (VARS1)
Amino acid related enzymes [BR:
rtem01007
]
Aminoacyl-tRNA synthetase
Class I (U)
120913511 (VARS1)
Transfer RNA biogenesis [BR:
rtem03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120913511 (VARS1)
Prokaryotic type
120913511 (VARS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
GST_C_2
Val_tRNA-synt_C
GST_C_3
Arc1p_N_like
tRNA-synt_1e
RNase_PH
Pop8
Motif
Other DBs
NCBI-GeneID:
120913511
NCBI-ProteinID:
XP_040179416
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All DBs
Position
9:53144055..53246048
Genome browser
AA seq
1264 aa
AA seq
DB search
MKYIKTWESRSLLPRPTMSTLYLPLSSTSDPQCTWVRVCGQFSPHPRPEVKEVSSGPRGL
PLPCLLSPSTGSVWGAWAVSYMLAPESLSGDGDQRSFSLIKQWVNYAESDMLPAAYGIDH
KPTKDRARVELQRILEVLDSHLKVRTYLVGERLSLADIAVSCCLIYPFSKVVSPSTRQNF
PNVTRWFLTCVNQPQFKEIIGVVVLFNGDLKSSNLHAPAAPTSTDAVVNGPPKTAAQLKK
ESKKKEKLEKFQQKQDKIKVQQIEKKPKVEKKEKKELGVITYDIPTPAGQKKDVSGTMPD
SYSPQYVEAAWYPWWEKEGFFKPEYGRTSISEPNPKGTFMMCIPPPNVTGSLHLGHALTN
AIQDSLTRWHRMRGELTLWNPGCDHAGIATQVVVEKKLWRERGKTRHDLGREAFIDEVWK
WKNEKGDRIYHQLRILGSSLDWDRACFTMESKLSNAVQEAFIRLHEAGVIYRSKRLVNWS
CTLNSAISDIEVDKKELTGRTVLPVPGYKEGVEFGVLVSFAYKVQDTGEEVVVATTRVET
MLGDTAVAVHPQDQRYQHLKGKSVIHPFENRLLPIVFDEFVDMSFGTGAVKITPAHDQTD
YEVGLRHKLDFINIMDDNGLLVNVPKQFLGMKRFEARKAVFEALKEKGLFKEIKDNPMVV
PVCSRSKDIVEPLLKPQWYVRCDEMGKKAADVVRDGHLAIKPEFHTKTWFSWMDNIRDWC
ISRQLWWGHRIPAYFVTINDPSVPPGQDTDGKYWVSGRSEEEARQKAAKQFNVAPAKLTL
KQDEDVLDTWFSSGIFPFSIFGWPNENEDLTVFYPGTLLETGHDILFFWVARMVMLGLTL
TDKLPFKEVYLHAIVRDAHGRKMSKSLGNVIDPLDVIKGITLEGLHDQLLESNLDHTELE
RAKEGQKFDYPSGIPECGTDALRFALCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFA
MRGLGDKFTPPESSLPTGQESLADLWILSRLSLAVDLCSTGFQNYDFPGITTAIYNFWLY
ELCDVYLECLKPVFAGSDEIAIAVAQNTLYTCLDAGLRLLSPIMPFLTEELYQRLPRRSS
EQFPSVSVAPYPETTEFRWRHEGTERKMDIALLIVKSIRSLRADYNLTKTKADCYVRCED
DDTRAVVAAYTSYITVLSSSRSLMILQPADPAPEGSAVNTASDKATVYLILKGLIDVEKE
VAKLQVKKTELSRQLEKLQERVSGADYRSKVPTAVQQQDADKMKQLETENQKVVEALSSF
QSMM
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatattaaaacctgggaaagcaggtctttacttccccgtcctacaatgtcgact
ctctaccttccattatcttctacctctgatccgcaatgcacctgggtgcgtgtctgtggg
cagttctcgcctcaccctcgcccagaggtaaaagaagtctcttcaggaccccggggtctt
cccctaccgtgccttctgtctccttccactggatctgtatggggggcttgggctgtctcc
tacatgctggcccctgagtctctgtcaggggatggggaccagcgaagcttctctctcatc
aaacagtgggtaaactatgcagaatccgacatgctgccagctgcctatggcatcgaccac
aaaccgactaaagaccgtgctcgggtggagctgcaaagaatcctggaggtgttggacagc
cacttgaaagtgcgcacatacctagtaggagagcgactgagccttgccgacattgctgtg
tcctgctgtcttatctatccatttagcaaggtcgtctctccctccaccaggcagaacttt
cccaacgttacccgctggttcctgacctgtgtcaaccaaccacagtttaaggagattata
ggagtggtggtactatttaatggagacctcaagagctcaaacctccatgccccagctgca
ccaaccagcacagatgctgttgtcaatggtcctccaaaaacagctgctcagttgaagaaa
gagtccaagaaaaaagagaagttggagaagttccagcagaagcaagataagataaaagta
cagcaaatagagaagaaaccaaaggtagaaaagaaagagaagaaggaacttggtgtgata
acctatgatatcccgactcctgcaggacagaagaaagatgtatctggtactatgccagat
tcatacagtcctcagtatgtggaggcagcctggtatccatggtgggagaaggaagggttc
tttaaaccagaatatgggagaaccagcatctcagagcccaatcctaaaggcacattcatg
atgtgcatccctccaccaaatgtgactggatctcttcatctaggtcacgctttgacgaat
gccattcaagacagtctgactcgctggcatcgcatgcgtggtgagctgaccttgtggaac
ccaggttgtgaccacgctgggattgccacccaggtcgttgtggagaagaagctttggaga
gagcgtggaaagacccggcatgatctgggcagagaagcatttatagatgaagtgtggaag
tggaagaatgagaaaggtgacagaatatatcaccaactgaggattctgggtagttccttg
gattgggatagagcctgtttcaccatggagtcgaaattatcgaatgctgtacaagaagcc
ttcattcgccttcatgaggccggtgtgatctatcgcagcaagaggcttgtcaactggtca
tgtacattgaactcggccatatcggatatagaggtggataagaaagaacttactggtcgt
acagtgctgccggtgcctgggtacaaagagggcgtggagtttggggtgctggtttctttt
gcttacaaagtacaagatacaggtgaagaggttgtggtggccacaactcgagtggagacc
atgctgggtgacacagcggtggccgtccatccgcaggatcaacgctatcagcatctgaaa
ggaaagagcgttattcatccatttgaaaaccgcctacttcccattgtctttgatgagttt
gtggatatgagctttgggacaggagcggtgaagatcactccggcacatgatcagactgat
tatgaggtggggctgcgacacaaattggattttataaacatcatggatgacaatggtctg
ctggtcaatgtgcccaaacaattcttgggtatgaagcgctttgaggctagaaaagcggtc
ttcgaggctctgaaagaaaaaggactatttaaggagataaaggacaatcctatggtggtc
cctgtatgcagtcgatccaaggatattgtggagcccctcttaaagcctcagtggtatgta
cgctgcgatgagatggggaagaaggcagctgatgtggtacgggatggacacctagcaatc
aaacctgaatttcacaccaagacctggttcagctggatggacaacatcagggattggtgt
atatcacgacagctgtggtggggtcaccgaattccagcctactttgtcactatcaatgat
ccttcagtaccaccgggacaggacacagatggcaagtattgggtcagtggtcgttcagag
gaggaggcaagacaaaaggccgctaaacagtttaatgtggctcccgcaaaattaacgctt
aaacaggatgaggatgtgcttgacacatggttttcttctggtatcttcccattctccatc
ttcggttggcccaatgagaatgaggatctgaccgttttctaccctggaacactcctggag
accggccatgacattttgttcttctgggtggcccgaatggtaatgcttggcctcacactg
accgacaagctgccctttaaagaggtgtacctacatgctatagtgcgtgatgctcacgga
cgtaaaatgagcaaatcccttggaaatgtaattgatcccttggatgtgatcaaagggata
acactggagggcctgcatgatcagctgctggagagtaacttggatcatactgagttggaa
agagccaaggaaggacagaaatttgactaccccagcgggatccctgaatgtggtacagac
gccctgagatttgccttgtgcgcctacactagtcagggacgtgacattaacctggatgtg
aacaggatcttgggttaccgtcatttctgcaacaaactctggaatgcaacaaagtttgcc
atgagaggcttgggagataaattcacacctccagaatcctcactgcccactggacaagaa
agtttggccgatctctggatcctaagtcgtctcagtctggcggtcgatctgtgtagcaca
ggtttccagaattacgacttcccaggaattaccacagcaatatacaacttctggctgtat
gagctctgtgacgtgtacctggagtgtttgaagcctgtgtttgctggctcagatgaaatc
gccattgctgtagcacagaatacactgtatacttgtctggatgccggtctccgtctcctt
tcccccatcatgcctttccttacagaagagctttaccagcgcctcccccgaagatcctct
gagcagttcccaagtgtctctgtagctccttatcctgagaccactgagttccgctggcga
cacgaaggcactgagaggaagatggatattgcattgcttatagtgaaatccatccggtct
ctgcgggctgactacaatctcaccaagacaaaagcagactgttacgttaggtgtgaggat
gatgataccagggctgtggttgctgcttatacttcatacatcacagtcctctcctcttct
cgctctttgatgatcctgcagcctgcagaccccgctccagagggcagtgctgttaacacc
gcatctgataaagccaccgtctaccttattctcaagggtcttattgatgtagaaaaagaa
gtggctaagctgcaagtgaagaaaaccgagctgagccgacagctagagaaactgcaggag
cgggtgtctggagcagattaccgcagcaaagttcccactgcagtacagcaacaagatgct
gacaagatgaaacagttggagacggagaaccagaaggtggtggaagctctgagtagtttt
cagtcgatgatgtag
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